Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq643 89.7 4e-13 >seq643 Length=9611585 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| ||| | || || ||| || || || || ||||| || || Sbjct 8386038 GCCCCCCCTGAGGCGCAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 8385979 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 8385978 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGG 8385919 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || ||| | | || || | ||| || Sbjct 8385918 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTATCACTGGGCTCAAC 8385859 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || || || |||| || || ||||| ||||||||| Sbjct 8385858 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATC 8385810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380866497401745