Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13889 141 2e-28 seq41 141 2e-28 seq888 109 1e-18 seq810 93.3 8e-14 >seq13889 Length=1787 Score = 141 bits (156), Expect = 2e-28 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 813 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 754 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || |||||| |||| Sbjct 753 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGG 694 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 693 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 651 >seq41 Length=584612 Score = 141 bits (156), Expect = 2e-28 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 563906 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 563847 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || |||||| |||| Sbjct 563846 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGG 563787 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 563786 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 563744 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || ||| ||||||||| | | ||||||||| ||||||| ||||||||| Sbjct 566934 CCCTTGCTGACCGGGGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTGGGCCAGCTCA 566875 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| || || || | | ||| || || | Sbjct 566874 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTCAGGCGCTGG 566815 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| ||| | |||||| | | ||||| | ||| | || ||||| ||||| || Sbjct 566814 GCCTCGGGGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACG 566755 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||||||||| | ||| | | |||| || Sbjct 566754 CCGATGCCGATGGGCCGGTGCCGCCGGTTGGA 566723 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||| ||||| | ||| | ||| ||||||||||||||| Sbjct 568916 CTGGAACTCCCCCGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 568857 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| ||||||||||| | || ||||| || Sbjct 568856 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCAGTGGGCATGGGGGACAGGAGGAGGCT 568797 Query 213038 GTTCCTCACTCCGT 213051 ||||||||| |||| Sbjct 568796 GTTCCTCACACCGT 568783 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || |||| ||| || || ||| || || |||| ||| ||| || Sbjct 562694 CATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATCTCTGGCTCTCTGCTCTTCTTT 562635 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 |||| ||| || ||| || ||||| |||||||||||| |||||||||||||| ||| Sbjct 562634 CCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGCTCCAGGTA 562575 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 ||||||||| || || || |||| Sbjct 562574 GATGGCAAAAGCCCCAGGTCTCT 562552 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| |||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 570371 GTTGAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCCGCAGCCATCTTCAGGATGGT 570312 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||||||||| ||||||||| |||||| ||| | || ||||| ||||||| | || Sbjct 570311 TTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCATCTGGGATCTCAGG 570252 Query 212816 GATGTTCTG 212824 ||||||||| Sbjct 570251 GATGTTCTG 570243 >seq888 Length=24229370 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||||||| ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 17259736 CTTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCA 17259677 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 |||| ||| || | ||||||||| || | ||| || || || || Sbjct 17259676 CTTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGCTCTGCTTT 17259632 >seq810 Length=3762695 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| |||| |||||| ||||| ||| ||| ||| Sbjct 3040435 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAACTGTGTGGTCCTCCAGGTCCTTCTCCCTC 3040494 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||||||| |||||||||| || || || || |||||||| Sbjct 3040495 ACCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTCGTTCTGTC 3040538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931354469689600