Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq41 107 4e-18 seq13889 95.1 2e-14 seq2 87.8 3e-12 >seq41 Length=584612 Score = 107 bits (118), Expect = 4e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || |||| | ||||||||| || |||||||| || || || ||||| Sbjct 562715 CTGGTTGGTTTCCACCCGTTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATC 562656 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| | |||||| || || |||| ||| |||| |||| ||||||||| ||||| Sbjct 562655 TCTGGCTCTCTGCTCTTCTTTCCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTC 562596 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||||||||||| |||| ||| | ||| || |||| || || Sbjct 562595 CAGGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGGT 562549 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || ||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 563923 CCACCTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 563864 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 563863 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 563804 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 563803 TGCCAGTCTC 563794 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||| ||||| | ||| | ||| ||| | || ||||| Sbjct 568919 CACCTGGAACTCCCCCGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 568860 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| ||||||||||| | || || || Sbjct 568859 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCAGTGGGCATGGGGGACAGGAGGAG 568800 Query 221242 ACTGTT 221247 ||||| Sbjct 568799 GCTGTT 568794 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 |||||| ||| |||||||||||| ||||| || ||| || | || ||||||||| Sbjct 566863 CAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTCAGGCGCTGGGCCTCGGGGCT 566804 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 |||||| | | || | ||| |||||||||| ||||| || ||||| ||||| Sbjct 566803 CTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGAT 566744 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 ||||| ||| | || |||||| Sbjct 566743 GGGCCGGTGCCGCCGGTTGGA 566723 >seq13889 Length=1787 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || ||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 830 CCACCTCCTCGTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 771 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 770 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 711 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 710 TGCCAGTCTC 701 >seq2 Length=61069995 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| |||||||| || ||||| ||||| || || || | Sbjct 20733618 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 20733677 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| ||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 20733678 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAGA 20733736 Query 26002 GACGAGG 26008 || |||| Sbjct 20733737 GATGAGG 20733743 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| |||||||| || ||||| ||||| || || || | Sbjct 20738203 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 20738262 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| ||| ||||| || ||| ||||| ||||| || || || ||||| Sbjct 20738263 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAACTTATTAGCAGA 20738321 Query 26002 GACGAGG 26008 || |||| Sbjct 20738322 GATGAGG 20738328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928666984273600