Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq617 100 2e-15 seq643 96.9 2e-14 seq715 89.7 3e-12 >seq617 Length=9440908 Score = 100 bits (110), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||| || || ||| |||||| | ||||| || | || || | Sbjct 4534284 AGACGCAGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGACAGGGTACGA 4534343 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||| || || | ||||| || || ||||| |||||| Sbjct 4534344 CCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCC 4534403 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| |||||| ||||| || ||| || | | ||| ||||| Sbjct 4534404 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTG 4534463 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || || || Sbjct 4534464 ATGGTCTTGCCAGTCAGGGTCTTGACAAATATCTG 4534498 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 4534118 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTT 4534177 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||||| |||||| || ||| || | | |||||||| || Sbjct 4534178 GTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 4534237 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 4534238 GGTCTTGCCAGTCAGGGTCTTGACAAAGATCTG 4534270 >seq643 Length=9611585 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| ||||| || | || ||||| |||||||| |||||||| Sbjct 8385054 ATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTT 8384995 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| |||||| |||||| || | | |||||||| || Sbjct 8384994 GTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACCTCAAGGGTGAT 8384935 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 8384934 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 8384902 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||| || || || |||||| | || || |||| || || | Sbjct 8385344 AGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGA 8385285 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| ||||| ||||| || | || ||||| |||||||| |||||| Sbjct 8385284 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 8385225 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || || ||||| |||||| || | | ||| ||||| Sbjct 8385224 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACTTCCAGGGTG 8385165 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || || || Sbjct 8385164 ATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTG 8385130 >seq715 Length=7679851 Score = 89.7 bits (98), Expect = 3e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 4181715 GGCATTCCCCCTGCTCCCAGAGGTGTCCCTCAGATTGAAGTAACCTTTGATATTGATGCC 4181774 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || || || ||||| Sbjct 4181775 AATGGCATCCTGAACGTGTCTGCT 4181798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267522265341620