Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq758 188 9e-42 seq13889 120 4e-21 seq64 120 4e-21 seq41 120 4e-21 seq768 95.1 1e-13 seq65 87.8 2e-11 >seq758 Length=45430612 Score = 188 bits (208), Expect = 9e-42 Identities = 163/202 (81%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 20270346 GCTTGGCCAGCTCGCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 20270287 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20270286 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20270227 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 20270226 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 20270167 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20270166 GCACCTGCTTGAGCACCTTGTA 20270145 Score = 185 bits (204), Expect = 1e-40 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 20175559 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 20175500 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20175499 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20175440 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 20175439 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 20175380 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20175379 GCACCTGCTTGAGCACCTTGTA 20175358 Score = 185 bits (204), Expect = 1e-40 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 20190659 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 20190718 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20190719 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20190778 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 20190779 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 20190838 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20190839 GCACCTGCTTGAGCACCTTGTA 20190860 Score = 185 bits (204), Expect = 1e-40 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 20290409 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 20290350 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20290349 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20290290 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| |||||||| Sbjct 20290289 TGTCGTTGACGAAGGAGTTCATGATACTCATGGCCTTGGAGGAGATGCCCGTGTCGGGGT 20290230 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20290229 GCACCTGCTTGAGCACCTTGTA 20290208 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 20247089 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 20247148 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20247149 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20247208 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||| ||| |||||||| Sbjct 20247209 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATACCCGTGTCGGGGT 20247268 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20247269 GCACCTGCTTGAGCACCTTGTA 20247290 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 20300177 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 20300118 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20300117 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20300058 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||| ||| |||||||| Sbjct 20300057 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATACCCGTGTCGGGGT 20299998 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 20299997 GCACCTGCTTGAGCACCTTGTA 20299976 Score = 168 bits (186), Expect = 8e-36 Identities = 141/173 (82%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 1254372 CGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGA 1254431 |||||||| ||||||||||| |||| | ||| ||| ||||||||| |||||||||| Sbjct 20294495 CGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGT 20294436 Query 1254432 CGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGAC 1254491 || ||||||| | ||||||| |||| ||||||||||| || |||||||||| | Sbjct 20294435 CGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCC 20294376 Query 1254492 ATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 || | |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 20294375 ATGGCCTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTGAGCACCTTGTA 20294323 Score = 125 bits (138), Expect = 9e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 20179280 GCTTGGCCAGCTCGCCAGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 20179339 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 20179340 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 20179399 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| || |||||||||| Sbjct 20179400 TGTCGTTGACGAAGGAGTTCATGA 20179423 >seq13889 Length=1787 Score = 120 bits (132), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 804 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 745 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 744 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATG 685 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 684 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 636 >seq64 Length=21146773 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||||||||| || | | || Sbjct 9771124 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGAGGTGA 9771065 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| ||| ||| || | ||||| || | | Sbjct 9771064 TGGTAGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 9771005 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| ||| || | Sbjct 9771004 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGAT 9770945 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 9770944 GAACCTGCTTCAGCACCTTGTAGA 9770921 >seq41 Length=584612 Score = 120 bits (132), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 563897 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 563838 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 563837 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATG 563778 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 563777 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 563729 Score = 105 bits (116), Expect = 8e-17 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||| ||||| |||||||||||||| || ||||| || || ||||||| Sbjct 561540 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 561481 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||||||||| |||| |||||||| || || ||||| Sbjct 561480 AGATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 561438 Score = 87.8 bits (96), Expect = 2e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || |||||||| || | ||| |||||||||||| ||||| | |||| | |||| Sbjct 568912 AACTCCCCCGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 568853 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||||||||||||||| | || | ||| ||||||||| | | || |||||| Sbjct 568852 TTGTTGCCCAGGATCTGGGCAGTGGAGGCAGTGGGCATGGGGGACAGGAGGAG 568800 Score = 86.0 bits (94), Expect = 8e-11 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||| ||||| ||||| |||||| | |||| |||||| | || ||| |||||| | | Sbjct 566855 CGTAGTAGATGGTCTCGAAGATGTGCTGGTTCAGGCGCTGGGCCTCGGGGCTCTCGAAGG 566796 Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906 | | ||| | | || ||||||| |||||||||||||||| ||| || ||||||| Sbjct 566795 GGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGGCCGGT 566736 Query 1627907 GGCGCAGGTTCGAGTGGCGGGCCT-CGGGCAC 1627937 | ||| |||| ||| | ||||| |||| || Sbjct 566735 GCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 566704 >seq768 Length=5269588 Score = 95.1 bits (104), Expect = 1e-13 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| |||||||| || || || | ||| | | ||| ||||| |||||| || || Sbjct 2922758 CTGGTAGTCGGTGCCTCGGACGAATTTGAGCCTGTCCAAGGGCACCCCGATGCTCTCCAG 2922699 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| ||||| || | Sbjct 2922698 CATGGCCTTGATCACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGGGC 2922639 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 ||| |||||| |||| ||||| | ||| ||||||||||| Sbjct 2922638 CTTCATGTTGTCCAGGTAAGCGTGGAGGTCAGCAAAGAGGAT 2922597 >seq65 Length=358041 Score = 87.8 bits (96), Expect = 2e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || || | || ||||| | |||||| || || Sbjct 234261 GCTTGGCCAGCTCGCCGGGCAGCAGGAGCCGGGCCGCCGTCTGCACCTCGCGGCTGGTGA 234320 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| | | | | || ||||| | |||||| | | | | ||| |||| || Sbjct 234321 TGGTGGAGCGGTGGCTGTACTGGGCCAGGTGCGAGGCCTCCGAGGCCAAGCGCTCGAACA 234380 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||| |||||||||| ||| | |||| ||||||| | ||| |||| Sbjct 234381 TGTCGTTGATAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGGTGAGGTCTGGGT 234440 Query 1254523 GCACCT 1254528 |||||| Sbjct 234441 GCACCT 234446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105882379379855