Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq617 194 3e-44 seq643 170 4e-37 seq710 118 2e-21 >seq617 Length=9440908 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | |||||| |||||||||||||| || ||||| || || Sbjct 4534275 CCACCTCTCAGACGCAGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGAC 4534334 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||||||||| || || ||||| || || || Sbjct 4534335 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGA 4534394 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||| ||||| || || ||||| ||||| || ||| | || || ||| Sbjct 4534395 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4534454 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| |||||||||||||| Sbjct 4534455 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAATATCTGCAT 4534501 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||||| || | |||||| || || || ||||| || || || || || Sbjct 4534047 CCTCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4534106 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || || || ||||||||||| || || || |||||||| || Sbjct 4534107 AATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 4534166 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| ||||| ||||||||||| || ||| | || || || Sbjct 4534167 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 4534226 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4534227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Score = 159 bits (176), Expect = 7e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||||| |||||||||||||| || || ||||| || || || ||||| Sbjct 4534503 CCACCTCTGAGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4534562 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||| ||||| || || || |||||||| || Sbjct 4534563 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGA 4534622 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || |||||||| || ||||| ||||| || ||| | || || || Sbjct 4534623 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4534682 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || || ||||| || |||| || || || || ||||||||| || Sbjct 4534683 TCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATTTTT 4534733 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||||| || | |||||| || || || ||||| || || || |||| Sbjct 4533817 TACCACCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 4533876 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| || || || ||||||||||| || || || || || |||| Sbjct 4533877 ACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAG 4533936 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||||||||| || ||| | || || | Sbjct 4533937 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGA 4533996 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4533997 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 >seq643 Length=9611585 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | ||||||||| || || ||||| || || || ||||| Sbjct 8385581 CCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 8385522 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| || || || ||||||||||| || || || || |||||||| Sbjct 8385521 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 8385462 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || ||| | || || || Sbjct 8385461 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 8385402 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| |||| ||||| ||||| |||||||| Sbjct 8385401 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | ||| || || ||||| ||||| || || || ||||| Sbjct 8385125 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8385066 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||| || || || || || ||||| ||||| Sbjct 8385065 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385006 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||||||||| |||||| | || || || Sbjct 8385005 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTATCACTGGGCTCAACC 8384946 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 8384945 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8384899 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | ||| || || ||||||||||| || || || ||||| Sbjct 8385353 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 8385294 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || ||||| || || || || || ||||| ||||| Sbjct 8385293 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385234 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| |||||| | || || ||| Sbjct 8385233 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCACTGGGCTCAACT 8385174 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| ||||| |||||||| Sbjct 8385173 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | ||| || || ||||||||||| || || || ||||| Sbjct 8385809 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 8385750 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || || |||||||| || || || || ||||| || Sbjct 8385749 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8385690 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || || || || ||| | || || ||| Sbjct 8385689 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACT 8385630 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 8385629 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8385583 >seq710 Length=47180413 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| || | |||||||| || ||||| || ||||| || || || || Sbjct 37033854 GCTTTATGGTGGTATTACGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTTATC 37033913 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| ||| |||||||| | || || ||||| ||||| || ||||| Sbjct 37033914 CTGAGGAAGAAATTTAACCAGATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 37033973 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 37033974 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 37034016 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| |||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 37036176 AGCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGG 37036235 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || || || |||| ||| | ||||| | |||||||| || || | || || Sbjct 37036236 ATTAGCAGCTTGCGGCCCTAAATTTCAGAAGTACCTGTGGTGGAAACGATACTTGACCAT 37036295 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 37036296 ATTGCAATTGGTA 37036308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981634542491785