Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq710 123 5e-23 >seq710 Length=47180413 Score = 123 bits (136), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| || | |||||||| || ||||| || |||||||| || || || Sbjct 37033854 GCTTTATGGTGGTATTACGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTTATC 37033913 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| ||||| || || ||||| ||||| || ||||| Sbjct 37033914 CTGAGGAAGAAATTTAACCAGATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 37033973 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 37033974 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 37034014 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 || |||||||| ||||| ||||| | ||||| ||||| |||||||| | |||||||| Sbjct 37036177 GCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 37036236 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || || || | || ||| | ||||| | |||||||| || ||| | || ||| Sbjct 37036237 TTAGCAGCTTGCGGCCCTAAATTTCAGAAGTACCTGTGGTGGAAACGATACTTGACCATA 37036296 Query 58661 ATGCAATTGGTA 58672 ||||||||||| Sbjct 37036297 TTGCAATTGGTA 37036308 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 37036809 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 37036868 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| || | || || || || ||||||| Sbjct 37036869 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 37036928 Query 58789 TAACTTCTATTTTAGAACATACAA 58812 ||||||||| | | | ||||| || Sbjct 37036929 TAACTTCTACTATCGGACATATAA 37036952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903238253218400