Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq526 107 3e-18 seq6147 105 9e-18 seq758 105 9e-18 seq617 104 3e-17 >seq526 Length=10987953 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3135827 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3135768 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 3135767 CCCGACGGGGAG 3135756 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| |||||| Sbjct 3135753 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 3135812 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 3135813 CTATACTAACGAGGA 3135827 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3135827 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3135768 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 3135767 CCCGACGGGGAG 3135756 >seq6147 Length=8391 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 8244 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 8185 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 8184 CCCCGACGGGGAG 8172 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 8243 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 8184 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 8183 CCCGACGGGGAGG 8171 Score = 95.1 bits (104), Expect = 2e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 8172 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8231 Query 139413 TACTAACGAGGATTTTGGTACACG 139436 |||||||||||| | ||||||| Sbjct 8232 TACTAACGAGGAACT--GTACACG 8253 >seq758 Length=45430612 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 21780379 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 21780438 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 21780439 CCCCGACGGGGAG 21780451 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 22736421 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 22736362 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 22736361 CCCGACGGGGAG 22736350 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 21780380 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 21780439 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 21780440 CCCGACGGGGAGG 21780452 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 22736421 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 22736362 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 22736361 CCCGACGGGGAGG 22736349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 21780451 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21780392 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 21780391 TACTAACGAGGA 21780380 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 22736350 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 22736409 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 22736410 TACTAACGAGGA 22736421 Score = 89.7 bits (98), Expect = 7e-13 Identities = 67/75 (89%), Gaps = 3/75 (4%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTG-GT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||||||||||||| || ||||| |||| ||||| | |||||||||||||||||||| Sbjct 21780667 TCCTCGTTAGTATAGTGTGTGAGTAT-CCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 21780609 Query 11788 CCCCGACGAGGAGGG 11802 |||||||| || ||| Sbjct 21780608 CCCCGACGGGGTGGG 21780594 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/71 (90%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTG-GTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||||||||||||| || ||||| |||| ||||| | |||||||||||||||||||| Sbjct 21780667 TCCTCGTTAGTATAGTGTGTGAGTAT-CCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 21780609 Query 8717 CCCCGACGAGG 8727 |||||||| || Sbjct 21780608 CCCCGACGGGG 21780598 >seq617 Length=9440908 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 4538442 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 4538383 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 4538382 CCCCGACGGGGAGG 4538369 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 4538441 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4538382 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 4538381 CCCGACGGGGAG 4538370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4538370 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4538429 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4538430 TACTAACGAGGA 4538441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652719821023600