Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq759 145 9e-30 seq771 104 3e-17 >seq759 Length=6126289 Score = 145 bits (160), Expect = 9e-30 Identities = 566/882 (64%), Gaps = 22/882 (2%) Strand=Plus/Minus Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || | ||| || |||||||| || || ||| | || || | | Sbjct 2091096 CCAAAAACACAGACAGAGCGAATGTGAACTCCGCTGCATGGTGGGTACGGTGCACCTTTG 2091037 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 2091036 GACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 2090977 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 |||||||||| |||| || | || || || || ||| | || | |||||| | || Sbjct 2090976 ACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGGACATCAGGGATTCTCTGAATTGT 2090918 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| || || || || || | |||||| |||||||| | Sbjct 2090917 TGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACTCAAGTA- 2090859 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || || || || | ||| | || ||||| || || || Sbjct 2090858 --TTTTGCTGCTTTCTAAAACATATTCTACAAATCTTCTGCTAACTATAAAATAGGCACT 2090801 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || | | | ||| || | | ||||||| || ||||| || Sbjct 2090800 ACCAGAAAAAATTGGAGTACTCAGAGGTGGTAGTTGTTTGTCTGTGCCTGTGTTCTTTAT 2090741 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | | | | || || ||||||| | ||| || || || Sbjct 2090740 TTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 2090685 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | ||| || | | || || || Sbjct 2090684 TTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCT 2090625 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | ||||| || | |||||||| | || || ||||| || | |||||||| || | Sbjct 2090624 GGTTGGTTTTTATAGGAAAGTCCATACCACATAGATTTATTAGGTATTTCCAGTTTGAAC 2090565 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | | ||| ||||| | | ||||| | || ||||| || | ||||| || || | Sbjct 2090564 TTCTACTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCAT 2090505 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || || ||||| ||| | | | ||||||||| || ||||| || ||||| ||| Sbjct 2090504 ATACCACACTCTCTAACTGGCTTGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 2090445 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || ||||| || | || || | ||| | ||||| || | |||||| | || Sbjct 2090444 TCACAGC-AGTGAAAAAAGATTCTGGA--GATTTTTTGTCTACATGAATGCAGTAAAAAT 2090388 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||| || || ||||| | || || | ||| || | |||||| || || || | |||| Sbjct 2090387 TCTGTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCA 2090328 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACT 163009 | || || || || || || || || || || || ||||||| | ||| ||| | Sbjct 2090327 CTATTGAGTAAGCAATCGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATT 2090268 Query 163010 TGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAA 163051 | | | | || | |||||||| |||||||||||| Sbjct 2090267 TCCTAGTCTTGGTGAAGGAGGCACAGTCTGCCGTCATGTTAA 2090226 >seq771 Length=4601986 Score = 104 bits (114), Expect = 3e-17 Identities = 259/386 (67%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 162603 CTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCT-GACGCACCATCTCTAGATTGGTCT 162661 ||| || ||||| || ||| || ||||||| | ||||| ||||| ||||||| Sbjct 3580477 CTCCAGGCTGTTCCGGCCCTGCAGCACCTTCAGGGCGGCGCACGATCTCGGCGTTGGTCT 3580536 Query 162662 TAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGT 162721 | | ||| ||||||||||||||| || | | || ||| ||| | |||| Sbjct 3580537 TGATGGGGAAGTCGGTGCCGCAGGTGTTGAGCAGGTACCGCCAGGGCACGGGGC-TCCGC 3580595 Query 162722 A-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACG 162780 | ||| ||| | | ||||| || |||||||| | || ||| || ||||| || ||| Sbjct 3580596 AGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTAGACCACG 3580655 Query 162781 CTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCC 162840 | |||| | |||| || ||||| ||| ||| || | || || ||||||| Sbjct 3580656 TTTTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGCCTGCGATGGCCCGCACGGCC 3580715 Query 162841 AGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGG 162898 ||| | | || | || || || ||||| |||||||| | ||||| |||| Sbjct 3580716 TCCTGGAAGGCGGCCGGG--GACTTGCTGTCCACGTGCACGCAGTAGACGTTCTGGGGGG 3580773 Query 162899 CGTAGATGGCCCTCAGTAATCTCTCGAA-CATCTCTATCTTATGGTGTACCACGATAGAA 162957 |||||| || | ||| | | |||||| |||||| || || | ||| | || || || Sbjct 3580774 CGTAGAGGGAGCGCAGGAGCCGCTCGAAACATCTCGATTTTGTTGTGGATGACCATGGAG 3580833 Query 162958 TACGCTATGGGGAACTCAGCCTCCTC 162983 || || ||||||||||| |||||||| Sbjct 3580834 TAGGCGATGGGGAACTCCGCCTCCTC 3580859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578321266424000