Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq13889 95.1 1e-14 seq41 95.1 1e-14 seq643 84.2 2e-11 seq617 84.2 2e-11 >seq13889 Length=1787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 812 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 753 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| |||| ||||| | ||| ||| |||||||||| || ||| ||||| Sbjct 752 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 701 >seq41 Length=584612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 563905 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 563846 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||| |||| ||||| | ||| ||| |||||||||| || ||| ||||| Sbjct 563845 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 563794 >seq643 Length=9611585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || ||||||||||| || |||||| |||||| ||||| || |||| | Sbjct 8385776 GATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCA 8385717 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || ||||| || || ||||| || || || || |||| Sbjct 8385716 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACG 8385657 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| ||||| | || | || || |||||||| || || Sbjct 8385656 TTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 8385597 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 8385596 ACGAAGATCTGCAT 8385583 >seq617 Length=9440908 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| |||||| ||||| || || | Sbjct 4534536 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCG 4534595 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| |||||||| || |||||||| || || || ||| || | Sbjct 4534596 AAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 4534655 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| ||||| Sbjct 4534656 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTG 4534715 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 4534716 ACGAAGATCTGCAT 4534729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476519958743400