Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq758 212 9e-49 seq64 125 1e-22 seq65 123 4e-22 seq13889 120 4e-21 seq41 120 4e-21 >seq758 Length=45430612 Score = 212 bits (234), Expect = 9e-49 Identities = 185/229 (81%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| ||| |||| ||||| Sbjct 20270145 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 20270198 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20270199 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20270258 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| ||||||||| Sbjct 20270259 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 20270318 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 20270319 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 20270367 Score = 206 bits (228), Expect = 4e-47 Identities = 184/229 (80%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| ||| |||| ||||| Sbjct 20175358 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 20175411 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20175412 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20175471 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 20175472 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 20175531 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 20175532 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 20175580 Score = 206 bits (228), Expect = 4e-47 Identities = 184/229 (80%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| ||| |||| ||||| Sbjct 20290208 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 20290261 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20290262 AGTATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20290321 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 20290322 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 20290381 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 20290382 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 20290430 Score = 203 bits (224), Expect = 5e-46 Identities = 183/229 (80%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| ||| |||| ||||| Sbjct 20190860 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 20190807 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20190806 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20190747 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 20190746 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 20190687 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| |||||| |||||||||||||||| Sbjct 20190686 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 20190638 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || | | ||| ||| |||| ||||| Sbjct 20247290 TACAAGGTGCTCAAGCAGGTGCACCCCGACACGGGT-----ATC-TCCTCCAAGGCCATG 20247237 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20247236 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20247177 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 20247176 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 20247117 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 20247116 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 20247068 Score = 197 bits (218), Expect = 2e-44 Identities = 182/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || | | ||| ||| |||| ||||| Sbjct 20299976 TACAAGGTGCTCAAGCAGGTGCACCCCGACACGGGT-----ATC-TCCTCCAAGGCCATG 20300029 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 20300030 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 20300089 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 20300090 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 20300149 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||||||||||||||||||||||| Sbjct 20300150 CTGCTGCTGCCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 20300198 Score = 163 bits (180), Expect = 4e-34 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 724978 TCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGG 725037 |||||||||| || ||||||||||| |||| ||||||| | ||||||| ||||||| Sbjct 20179423 TCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGCCTGG 20179364 Query 725038 CGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGA 725097 ||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| ||| Sbjct 20179363 CGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGGCTGC 20179304 Query 725098 TCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| ||||| ||||||| |||||| |||||||||||||||| Sbjct 20179303 TGCTGCCTGGCGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 20179259 Score = 149 bits (164), Expect = 9e-30 Identities = 141/179 (79%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||||||||||||||||||| || || |||| ||| |||| ||||| Sbjct 20294323 TACAAGGTGCTCAAGCAGGTGCACCCCGACAC-----GGGCATC-TCCTCCAAGGCCATG 20294376 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| || Sbjct 20294377 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGA 20294436 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 20294437 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCG 20294495 >seq64 Length=21146773 Score = 125 bits (138), Expect = 1e-22 Identities = 176/244 (72%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || || || ||| |||| Sbjct 9770908 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTTCATCCTGACAC---TGG--CATC- 9770961 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| | Sbjct 9770962 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 9771021 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | |||||||||| || ||| | | || |||||| Sbjct 9771022 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCTACCATCACCTCCCGGGAGATC 9771081 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| ||| || ||||| || ||| Sbjct 9771082 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCATGCTGTCTCTGAAGGC 9771141 Query 725139 ACCA 725142 |||| Sbjct 9771142 ACCA 9771145 >seq65 Length=358041 Score = 123 bits (136), Expect = 4e-22 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 724953 CCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 ||||| ||| |||| ||||| ||||||||||| ||| ||||||||||| |||| ||| Sbjct 234428 CCATC-TCCTCCAAGGCCATGAGCATCATGAACTCCTTTATCAACGACATGTTCGAGCGC 234370 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 | | | | |||||| | |||||| | | || | | ||| ||| ||| || ||| Sbjct 234369 TTGGCCTCGGAGGCCTCGCACCTGGCCCAGTACAGCCACCGCTCCACCATCACCAGCCGC 234310 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||| | ||||| || | || || | ||| |||||| ||||||| ||||||||||||| Sbjct 234309 GAGGTGCAGACGGCGGCCCGGCTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCC 234250 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 234249 GAGGGCACCA 234240 >seq13889 Length=1787 Score = 120 bits (132), Expect = 4e-21 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 668 CAGCTCTGGTACGCCATCATCGAGTCCCAGACAGAGACTGGCACCCCCTACATGCTCTAC 727 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 728 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 786 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 787 CCTGTGCACCGAGATCGT 804 >seq41 Length=584612 Score = 120 bits (132), Expect = 4e-21 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 563761 CAGCTCTGGTACGCCATCATCGAGTCCCAGACAGAGACTGGCACCCCCTACATGCTCTAC 563820 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 563821 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 563879 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 563880 CCTGTGCACCGAGATCGT 563897 Score = 96.9 bits (106), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| |||||||||||||| ||||| || |||||| Sbjct 561438 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAGCAG 561497 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | ||||| |||||||| | |||| Sbjct 561498 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTGGCCG 561540 Score = 86.0 bits (94), Expect = 9e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 262936 CTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 ||| || | | ||||||||| ||| | || | |||||||||||||||| |||| | || Sbjct 568803 CTCCTGTCCCCCATGCCCACTGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATC 568862 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 ||| | ||| |||||||||||||| ||| | || |||||||| || || Sbjct 568863 GAGCCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCGGGGGAGTT 568912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176334040101030