Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq617 125 6e-24 seq643 120 3e-22 >seq617 Length=9440908 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 4533854 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAA 4533913 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || |||||||||| |||||| ||| | | | Sbjct 4533914 GATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 4533973 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 4533974 TTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 4534033 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4534034 AAAGATCTGCAT 4534045 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| ||| || || | || ||||||||||| || ||||| Sbjct 4534082 CTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAA 4534141 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| || | | | Sbjct 4534142 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATT 4534201 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 4534202 TTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 4534261 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4534262 AAAGATCTGCAT 4534273 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 4534538 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCGAA 4534597 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| ||||||| ||| | | | Sbjct 4534598 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATT 4534657 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| ||||| || Sbjct 4534658 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTGAC 4534717 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 4534718 GAAGATCTGCATT 4534730 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||| || |||| || ||| || | || ||||||||||| || ||||| Sbjct 4534311 TCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 4534370 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||| ||||| | |||| || |||||||| |||||| ||| | | | Sbjct 4534371 ATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 4534430 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| ||||| || || || |||| || || ||| Sbjct 4534431 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 4534490 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 4534491 AATATCTGCAT 4534501 >seq643 Length=9611585 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 8386001 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAA 8385942 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || |||||||||| |||||| ||||| | | Sbjct 8385941 ATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 8385882 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || || |||| ||||| || || || |||| || || ||| Sbjct 8385881 TCGATAGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 8385822 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 8385821 AAGATCTGCAT 8385811 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 8385089 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAA 8385030 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | || Sbjct 8385029 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 8384970 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || ||||| | ||||| || || || |||| || |||||| Sbjct 8384969 TCAATGGTATCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 8384910 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 8384909 AAGATCTGCAT 8384899 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 8385546 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 8385487 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||||||| |||||| ||||| | Sbjct 8385486 GATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 8385427 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 8385426 CTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 8385367 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 8385366 AAAGATCTGCAT 8385355 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 8385773 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAG 8385714 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| | ||||||||| |||||| ||||| | Sbjct 8385713 ATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 8385654 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || |||| ||||| || || || |||| || ||||| Sbjct 8385653 TCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 8385594 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 8385593 AAGATCTGCAT 8385583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 8385317 TCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAA 8385258 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||||| || ||||||||| |||||| ||||| | Sbjct 8385257 ATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 8385198 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || | || || |||| ||||| || || || |||| || || ||| Sbjct 8385197 TCAATGGTATCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 8385138 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 8385137 AAGATCTGCAT 8385127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450707301200200