Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq643 109 6e-19 seq617 109 6e-19 >seq643 Length=9611585 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||||||||| || ||||||||||| Sbjct 8385125 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8385066 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || ||||||| | |||||||||||| || Sbjct 8385065 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385006 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 8385005 ATGCCTTCCTTGTCCTGGATCTT 8384983 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| ||||||||| || ||||||||||| || |||||||||||| Sbjct 8386037 CCCCCCCTGAGGCGCAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 8385978 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| |||||||||| | |||||| || || || Sbjct 8385977 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGA 8385918 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 8385917 ATGCCCTCCTTGTCCTGGATCTT 8385895 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || |||||||| || || ||||||||||| Sbjct 8385353 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 8385294 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || ||||||| | |||||||||||| || Sbjct 8385293 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGA 8385234 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 8385233 ATGCCTTCCTTGTCCTGGATCTT 8385211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || || || ||||| || ||||||||||| Sbjct 8385581 CCACCTCTCAGACGCAGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 8385522 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 8385521 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 8385462 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | || || Sbjct 8385461 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACC 8385402 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || | || || || || || ||||| Sbjct 8385401 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || |||||||| || || ||||||||||| Sbjct 8385809 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 8385750 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || ||||| |||| | |||||| || || || Sbjct 8385749 AGGGTACGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 8385690 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| | || || Sbjct 8385689 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACT 8385630 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 8385629 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8385583 >seq617 Length=9440908 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| |||| ||| | ||| || ||||| ||||| || ||||||||||| Sbjct 4534503 CCACCTCTGAGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4534562 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || |||| | ||||||||| || || Sbjct 4534563 AGGGTACGACCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGA 4534622 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| ||||| || | ||||| | || || Sbjct 4534623 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4534682 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| ||||| || |||||||| Sbjct 4534683 TCAAGGGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATTTT 4534732 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 4534047 CCTCCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4534106 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || ||||| |||| | ||||||||| || || Sbjct 4534107 AATGTGCGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 4534166 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || |||||| || | ||||| | || || Sbjct 4534167 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 4534226 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 4534227 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || || || |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 4533816 TTACCACCCCTCAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4533875 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| || || || ||||| || || ||||| |||| | |||||| ||||| Sbjct 4533876 GACAGGGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGA 4533935 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || ||||| || | ||||| | || Sbjct 4533936 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 4533995 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || || || || ||||| Sbjct 4533996 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505301647793800