Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq617 149 2e-30 seq643 131 5e-25 seq715 111 5e-19 seq495 87.8 5e-12 seq24 84.2 7e-11 >seq617 Length=9440908 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || || ||||| || |||||| Sbjct 4534062 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCT 4534121 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 4534122 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 4534181 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 4534182 TGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 4534241 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 4534242 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || ||||| | || || |||||| Sbjct 4533834 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 4533893 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || |||||||| || || || ||| Sbjct 4533894 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 4533953 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 4533954 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 4534013 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 4534014 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || ||||| ||||| || || ||||| || || | || || |||||| Sbjct 4534290 AGGACAAGGTGCAGGGTAGATTCTTTCTGGATGTTATAGTCGGACAGGGTACGACCATCT 4534349 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | || || || || ||||| ||||| || || Sbjct 4534350 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 4534409 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || |||||||| || || | ||| Sbjct 4534410 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 4534469 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 4534470 TTGCCAGTCAGGGTCTTGACAAATATCTGCAT 4534501 >seq643 Length=9611585 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || ||||| ||||| || || || || || ||||| | || || |||||| Sbjct 8385566 AGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCT 8385507 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || |||||||| ||||| || ||| Sbjct 8385506 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 8385447 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | ||| || ||||| || || || | ||| Sbjct 8385446 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCAACCTCGAGAGTGATGGTC 8385387 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 8385386 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 >seq715 Length=7679851 Score = 111 bits (122), Expect = 5e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| |||| || | ||||| ||||||||||| || || ||||||| || Sbjct 4179391 ACTGTTACTAATGCAGTGGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCT 4179450 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || ||||||||||| | |||||| ||| | || || || ||||| || ||||| ||||| Sbjct 4179451 ACGAAAGATGCTGGAACCATTGCAGGGCTCAACGTCCTGAGAATTATCAATGAGCCCACA 4179510 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 || || || ||||| |||||||| || |||| Sbjct 4179511 GCAGCTGCCATTGCCTATGGGCTGGACAAAA 4179541 >seq495 Length=12029152 Score = 87.8 bits (96), Expect = 5e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || |||||||| ||||| || ||||| || ||||||||||| |||||| || Sbjct 893747 CAGCCTGGACAGCTGCTCCATAGGCTACAGCCTCGTCTGGGTTAATGCCACGAGAAGGTT 893688 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | || || ||||| || || | |||||| |||| Sbjct 893687 CCTTCCCATTGAAGAACTCTTTAACGAGCTGCTGGATTTTGGGGATGCGAGTTGATCCAC 893628 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | || || |||| | || | | | ||||||| | |||||| | Sbjct 893627 CAACAAGGACAATCTCGTCAATATCAGACTTCTTCAGGTCGGAATCTTCCAGAACTTTCT 893568 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 893567 GAACAGGCTTCATTGT 893552 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| || || || || || ||| || ||| || || || ||| Sbjct 892859 ACAGCTGCTGCCATTGCCTACGGACTGGACAA---GAGGGAGGGAGAGAAGAACATCCTT 892915 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | ||||| || ||||||||||| || || || ||| | || | ||| | Sbjct 892916 GTGTTCGACCTGGGTGGCGGCACTTTTGATGTCTCTCTCCTCACAATCGACAATGGAGTC 892975 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || || |||||| || || || ||||||||||| ||||| Sbjct 892976 TTTGAAGTTGTGGCTACCAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 893028 >seq24 Length=20913710 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 12109528 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 12109587 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||| | || ||||| || || ||||| ||| |||| Sbjct 12109588 TCTTCAGCCAAAAAATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAA 12109647 Query 223839 ACGCTACTA 223847 | || |||| Sbjct 12109648 AGGCAACTA 12109656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514957071572945