Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq41 96.9 4e-15 seq13889 87.8 2e-12 >seq41 Length=584612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||||| ||||||||||| | || |||| ||| || || |||||||||||| Sbjct 561532 CCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCC 561473 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 561472 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 561435 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| |||||||||||||| || || ||| Sbjct 561435 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 561494 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||||| ||||||| ||||| Sbjct 561495 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 561532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || ||||||||||||| | ||||| ||||||||| Sbjct 563901 CTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 563842 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| |||| |||||||||| |||||| || || || ||||| Sbjct 563841 CTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 563794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148 ||| |||||||| |||| |||||||| |||||||||||||||| ||||| | | | Sbjct 566731 GCGGCACCGGCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTCATGAG 566790 Query 20149 CCTCTCATTCGACGATCCCAAGGCGC-GCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207 || | ||||| ||| |||| | ||| || ||| || |||||||||| || | | Sbjct 566791 GTTCCCCTTCGAGAGCCCCGAGGCCCAGCG-CCTGAACCAGCACATCTTCGAGACCATCT 566849 Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267 || ||| |||||| || || || || ||| | ||| | ||||| ||||| || | Sbjct 566850 ACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCCAGGAGCAGGGCCCCTACGACACCT 566909 Query 20268 TCAAGGGGTCGCC 20280 | |||| || || Sbjct 566910 ACCAGGGCTCCCC 566922 >seq13889 Length=1787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || ||||||||||||| | ||||| ||||||||| Sbjct 808 CTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 749 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| |||| |||||||||| |||||| || || || ||||| Sbjct 748 CTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTC 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548419791783600