Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq844 102 9e-17 seq2 89.7 6e-13 seq41 87.8 2e-12 seq24 84.2 2e-11 >seq844 Length=2979043 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||| || || |||||| || |||||||| Sbjct 101890 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTCCCCCCGTGCAGCCGTGTGCCAAACTGA 101949 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || ||||| || | ||||||||||||| ||||||||| ||||||||||| || Sbjct 101950 CCGATGGGCTGCAGCAAGTTGAGGTTGTTGCTGCCCACGAAGTTCTGAGCCAAGTT 102005 >seq2 Length=61069995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 20733741 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20733682 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 20733681 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 20733622 Query 74892 AC 74893 || Sbjct 20733621 AC 20733620 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 20738326 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20738267 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 20738266 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 20738207 Query 74892 AC 74893 || Sbjct 20738206 AC 20738205 >seq41 Length=584612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| || || ||| Sbjct 561435 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACCCTGAAG 561494 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| ||||||||||| | || || ||||| Sbjct 561495 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 561532 >seq24 Length=20913710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || ||||| ||||| || |||||||| |||||||| || ||||||||||| Sbjct 12108329 ATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCTTCCAAAGATATGTTCTCCAT 12108388 Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542 |||| ||||| |||| ||| Sbjct 12108389 GAAGTCAAAAGGATTCTCTGC 12108409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547111242337000