Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq643 197 2e-45 seq617 197 2e-45 seq41 109 6e-19 >seq643 Length=9611585 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 8384899 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 8384958 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| ||||||| || || ||||||||||| || |||||||| || ||| Sbjct 8384959 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 8385018 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 8385019 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTACAAC 8385078 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || || || || ||||||| | ||||| Sbjct 8385079 ATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385125 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || || |||||| | || Sbjct 8385127 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385186 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||||| || || ||||||||||| || |||||||| || ||| Sbjct 8385187 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 8385246 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| || ||||||| ||||||||| | ||||| || Sbjct 8385247 CAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTCTCTGACTACAAC 8385306 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || || || ||||||| | ||||| Sbjct 8385307 ATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385353 Score = 187 bits (206), Expect = 3e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || || |||||| | || Sbjct 8385811 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385870 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| ||||| ||||||||| Sbjct 8385871 GATACTATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 8385930 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || |||| ||| ||||| | ||||| || Sbjct 8385931 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 8385990 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || || || || |||| || Sbjct 8385991 ATCCAGAAGGAATCCACCCTCCACCTCGTGCTGCGCCT 8386028 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || ||||| ||||||||| | || Sbjct 8385355 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8385414 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || ||||||||||||||| Sbjct 8385415 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 8385474 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| || || | ||||| || Sbjct 8385475 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 8385534 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || ||||||| | ||||| Sbjct 8385535 ATCCAGAAGGAGTCAACTCTGCACCTTGTGCTGCGTCTGAGAGGTGG 8385581 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || || |||||| | || Sbjct 8385583 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 8385642 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 8385643 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 8385702 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| ||||||||| | ||||| || Sbjct 8385703 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 8385762 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || || || ||||||| | ||||| Sbjct 8385763 ATCCAGAAAGAATCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 8385809 >seq617 Length=9440908 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||| ||| | || Sbjct 4534045 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 4533986 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || |||||||||||||| |||||||| |||||| Sbjct 4533985 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 4533926 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||||||||| | ||||| || Sbjct 4533925 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 4533866 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| || | ||||| Sbjct 4533865 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTGAGGGGTGG 4533819 Score = 172 bits (190), Expect = 6e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||||||| | || Sbjct 4534273 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 4534214 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | || || || || ||||||||||| || ||||| ||||| ||| Sbjct 4534213 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 4534154 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||| || | | ||||| || Sbjct 4534153 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGCACATTGTCCGACTACAAC 4534094 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| |||| || Sbjct 4534093 ATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCT 4534056 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || |||||||| || || || || |||||| | || Sbjct 4534501 ATGCAGATATTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGT 4534442 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || |||||||| || ||||| || ||||| Sbjct 4534441 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCCGACCAA 4534382 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| ||||||||| | |||||||| Sbjct 4534381 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCCGACTATAAC 4534322 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || || || ||| ||||||| | ||||| Sbjct 4534321 ATCCAGAAAGAATCTACCCTGCACCTTGTCCTGCGTCTGAGAGGTGG 4534275 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||| || || || || ||||| || || |||||||| ||| | | Sbjct 4534730 AATGCAGATCTTCGTCAAAACCCTGACTGGAAAGACCATCACCCTTGAGGTCGAGCCCAG 4534671 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || ||||||||||| || ||||| ||||| || Sbjct 4534670 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 4534611 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || ||||| ||||| || || |||| ||||||||| | ||||| || Sbjct 4534610 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 4534551 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || |||| |||| || | ||||| Sbjct 4534550 CATCCAGAAGGAGTCCACTCTGCACTTAGTGCTGCGCCTCAGAGGTGG 4534503 >seq41 Length=584612 Score = 109 bits (120), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 |||| || ||| | | || ||||| ||||||| | || |||||||||||| | || Sbjct 566924 CCGGGGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCTGGGCCAGCTCACAGCTGGCCT 566865 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 ||| ||||| ||| || ||| ||| |||| | || ||||| | | |||| | Sbjct 566864 CCA---GGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTCAGGCGCTGGGCCTCGG 566808 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 || ||||| | || | ||| | ||||| |||| ||||||||||| ||||||||| Sbjct 566807 GGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGC 566748 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| || ||||| ||| ||| || |||||||||| ||| Sbjct 566747 CGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 566708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570201221202800