Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq771 333 3e-86 >seq771 Length=4601986 Score = 333 bits (368), Expect = 3e-86 Identities = 686/1005 (68%), Gaps = 24/1005 (2%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || ||||| ||||||||||| |||||| |||||| | | ||| || | Sbjct 3580942 CGCCCGGCCACTACCTGAACATGACGAGGGACTGCAGCGCCTTCAGGCA-GACCCGGCGC 3580884 Query 13660 ATC-TCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || ||| | || ||||||| ||| |||| ||||| |||||||||||||| || || Sbjct 3580883 TTCATCGAGTTCCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTC 3580824 Query 13719 ATCCACCACAAGATCGAGATGTT-CGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAA 13777 |||||| |||| ||||||||||| |||||| |||||| | || |||||||||| ||||| Sbjct 3580823 ATCCACAACAAAATCGAGATGTTTCGAGCGGCTCCTGCGCTCCCTCTACGCCCCCCAGAA 3580764 Query 13778 CCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGC 13837 | |||||||||| ||||||||| ||||||| | || ||| || ||| ||| Sbjct 3580763 CGTCTACTGCGTGCACGTGGACAGCAAGTCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGC 3580704 Query 13838 CATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGG 13897 |||||| | |||||||| ||||| | ||||| ||| ||| | ||||||| |||| Sbjct 3580703 CATCGCAGGCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAACGTGGTCTACGC 3580644 Query 13898 CTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGT 13957 ||||||| || ||||||||||||||| ||||||| ||||||| |||||| Sbjct 3580643 CTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCGGGACCTGCTGCGGAGCCCCGT 3580584 Query 13958 CAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGA 14017 ||| |||||||||||||| ||||| | |||||||| ||||||||||| || Sbjct 3580583 GCCCTGGCGGTACCTGCTCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGA 3580524 Query 14018 GATCGTGCG-GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT 14074 ||||||||| || ||||||| ||| ||| |||| ||||||| | || | | | Sbjct 3580523 GATCGTGCGCCGCCCTGAAGGTGCTGCAGGGCCGGAACAGCCTGGAGTCGGAGAAGCCCT 3580464 Query 14075 GCCCAACCACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGG 14133 | | ||||| | ||| ||| | |||| ||||| | ||| | Sbjct 3580463 CGGCGGC--CAAGCGGGCGCGCTGGCAGTTCCA-CCACGAGGTGGGGA-AGGCCATCTCC 3580408 Query 14134 TGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAA 14193 || |||| || | ||| |||||||| |||| |||||| || |||| | Sbjct 3580407 CGG-----ACCGACATAGAGAAGCTGCCGCCGCCCCTCAACTGCCCCATGTTCACGGGCA 3580353 Query 14194 ACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGG 14253 |||| ||| | | ||| || |||| |||||| | || || || || || || Sbjct 3580352 ACGCGTACATCGTGGTGACACGGGGCTTCGTGCGGCACCTCTTCGAGAAC---CCCACGG 3580296 Query 14254 CCC---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCA 14310 | | | || | | |||| | ||||||| |||||||| ||||||||| ||||||||| Sbjct 3580295 CACAGAAGTTCCTCGAGTGGTCCAAGGACACCTACAGCCCTGACGAGCACGTGTGGGCCA 3580236 Query 14311 CCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCT 14370 || || | ||| || ||| |||| | ||| ||| ||||| | | | Sbjct 3580235 CCCTGACCCGCATGCCGGGCGTGCCGGGGGCCGTGCCCCACAACGACAAGTTCCAGCTGT 3580176 Query 14371 CGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGA 14430 |||||||| ||| | | | ||||||||| | ||| ||||| || || | Sbjct 3580175 CGGACATGAACGCCCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGCGACCCCAGCA 3580116 Query 14431 AAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGT 14490 | || || | ||||||||| ||| |||| |||| | | || ||||||||| |||| Sbjct 3580115 AGGGCGCGCCGTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCGTCTGCATCTACGGGG 3580056 Query 14491 CCGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGAC 14549 | ||||||||| ||| || | ||| | | || || || ||||||||||||||| | Sbjct 3580055 CGGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCC 3579997 Query 14550 GAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| |||||| |||| | | || || || ||| || ||||| Sbjct 3579996 GAGGTGGACGATGCCGCCATCCTGTGCCTCGAGGAGCACCTGCGC 3579952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658613092614400