Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 >seq2 Length=61069995 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| | || ||||||||||| || |||||||| Sbjct 50380575 CTCTGATGGCTTTGCCTCCATGCCATGCTCTTTGCCAATTCTATGTTCTAAATGGGGAAT 50380634 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||||| |||||||| | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 50380635 TGTCTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTG 50380694 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 | || ||| | |||||||| |||||||| || ||||| Sbjct 50380695 CCAGCTACTCACTGCTCACATACATGATTGCCCATGT 50380731 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || |||||||| |||||||| | ||| || ||||| ||||| ||||| |||| Sbjct 50380731 ACATGGGCAATCATGTATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGGCACTCCTAGT 50380672 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||||| || | |||||||| ||||| |||| |||||||| || |||||| Sbjct 50380671 CCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCCCCATTTAGAACATAGAAT 50380612 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| || | ||||| || || | |||||||||| Sbjct 50380611 TGGCAAAGAGCATGGCATGGAGGCAAAGCCATCAGAG 50380575 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 50377116 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCACGTGAGTTCC 50377175 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 50377176 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTGTATGGTTTCC 50377235 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 50377236 AGTGGAGGCACTTTGGAGCAGAATA 50377260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 50377260 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCT 50377201 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 50377200 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTC 50377141 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 50377140 ACACCTTTTGCAGAGAGCTCTTTGG 50377116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448176585766800