Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq617 102 6e-17 seq643 89.7 3e-13 >seq617 Length=9440908 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || ||||| || ||||| || || || || || Sbjct 4534732 AAAATGCAGATCTTCGTCAAAACCCTGACTGGAAAGACCATCACCCTTGAGGTCGAGCCC 4534673 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | ||| || ||||| ||||| | || ||||| Sbjct 4534672 AGTGACACCATTGAGAATGTCAAGGC-AAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4534614 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || || || || || || |||||||| | || || | || || Sbjct 4534613 TCAGCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTA 4534554 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || |||||||| | || ||||| Sbjct 4534553 CAACATCCAGAAGGAGTCCACTCTGCACTTAGT 4534521 >seq643 Length=9611585 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||||||||| ||||| ||| Sbjct 8385355 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCCAGT 8385414 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 8385415 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 8385474 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | || |||||| Sbjct 8385475 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 8385534 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 8385535 ATCCAGAAGGAGTCAAC 8385551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337946509980020