Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 105 5e-18 seq363 82.4 6e-11 >seq2 Length=61069995 Score = 105 bits (116), Expect = 5e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| || || || || |||||||| ||||| || ||||||||||| || || || || Sbjct 50380741 TAGCCCTGTAACATGGGCAATCATGTATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGG 50380682 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||| ||||| || | || || | Sbjct 50380681 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCCCCATTTAG 50380622 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || || || || | |||||||| ||||| | ||||| ||| Sbjct 50380621 AACATAGAATTGGCAAAGAGCATGGCATGGAGGCAAAGCCATCAGA 50380576 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || ||||| ||||||| || ||||| || ||| |||| ||| Sbjct 50377248 AAGTGCCTCCACTGGAAACCATACACTGGTCCCAAATCCCCCTCCTCTCTGGTGCT-GAA 50377190 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 50377189 ACCCTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 50377130 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||||| ||||| || || || || || ||||| Sbjct 50377129 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 50377090 >seq363 Length=12957389 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | |||||| | ||||| | |||| || || Sbjct 12410099 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAGAGGACGGCTCTTCTCAGGA 12410040 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 12410039 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 12409992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406087389004090