Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24 107 3e-18 seq41 96.9 5e-15 seq2 89.7 7e-13 seq13889 86.0 9e-12 >seq24 Length=20913710 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 12109533 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 12109592 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || || || ||||||||||| || ||||| || || ||||| || Sbjct 12109593 AGCCAAAAAATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGC 12109651 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 12108309 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 12108368 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 ||||| ||||| || ||||| || ||||| ||||| |||| || || || Sbjct 12108369 TCCAAAGATATGTTCTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 12108418 >seq41 Length=584612 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||||||| ||||||||||| ||||| || |||| || ||||||| || ||| || Sbjct 562702 ACCCGTTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGATCTCTGGCTCTCTGC 562643 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || || || ||||| || || || |||||||| | || || ||||| || Sbjct 562642 TCTTCTTTCCCAGTGTTCTTCTTCAGGTCCAGAAACTCAAAGATGTCCAGGTGCCACGGC 562583 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | | ||||||| Sbjct 562582 TCCAGGTAGATGGCAAAAGCCCCAGGTC 562555 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| |||||||| |||||||||| ||||| || ||||||||||||||||| ||| Sbjct 563261 TCAAATTCCTCTCCCCAGACATCATCCAGGCCAGGACACTCATTTGGGCACATCAAGGAC 563202 Query 77985 CAGTC 77989 ||||| Sbjct 563201 CAGTC 563197 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| |||||||| || || ||||||||||| | Sbjct 563894 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 563835 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 563834 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATGATG 563775 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 563774 GCGTACCAGA 563765 >seq2 Length=61069995 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 20733741 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20733682 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 20733681 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 20733623 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 20738326 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 20738267 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 20738266 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 20738208 >seq13889 Length=1787 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| |||||||| |||||||||| ||||| || ||||||||||||||||| ||| Sbjct 168 TCAAATTCCTCTCCCCAGACATCATCCAGGCCAGGACACTCATTTGGGCACATCAAGGAC 109 Query 77985 CAGTC 77989 ||||| Sbjct 108 CAGTC 104 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 |||||||| || || || || || ||||| |||||||| || || ||||||||||| | Sbjct 801 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 742 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| |||||||| || || || | || || || || || |||| || ||||| || Sbjct 741 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCTGTCTGGGACTCGATGATG 682 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 681 GCGTACCAGA 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694535814341600