Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq617 123 6e-23 seq643 118 2e-21 >seq617 Length=9440908 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| |||| || || | |||||| Sbjct 4534062 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGACCATCT 4534121 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| ||||||||||| || | | || |||||||| || Sbjct 4534122 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 4534181 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||||| | || | | |||| ||| ||| || ||||| || || Sbjct 4534182 TGGATCTTGGCTTTGACATTTTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 4534238 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 4534239 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534273 Score = 122 bits (134), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || | || ||||| ||||| || ||||||||||| || | | || Sbjct 4534509 CTGAGGCGCAGCACTAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 4534568 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||| |||||||| ||||||||||| || | | || ||| Sbjct 4534569 CGACCATCTTCCAGCTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATGCCT 4534628 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || ||| |||||| |||| | | |||| ||| ||| || ||| Sbjct 4534629 TCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCA 4534685 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || || || || || || || || || || ||||||| ||||||||| |||| Sbjct 4534686 AGGGTGATGGTCTTTCCAGTCAGGGTTTTGACGAAGATCTGCATTTTTCCCT 4534737 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 4533834 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 4533893 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| |||||||||||||| | | || || ||||| || Sbjct 4533894 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 4533953 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| ||| || ||||| || || Sbjct 4533954 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATG 4534010 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 4534011 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 4534045 >seq643 Length=9611585 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || || ||||| ||||||||||| || | | || | |||||| Sbjct 8385794 AGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 8385735 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 8385734 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 8385675 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| ||||| || || || Sbjct 8385674 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATG 8385618 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 8385617 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 8385583 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || ||||||||||| || | | ||| | |||||| Sbjct 8385566 AGCACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCT 8385507 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 8385506 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 8385447 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || ||||| || Sbjct 8385446 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGAGTGATG 8385390 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 8385389 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385355 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || || || || ||||||||||| || | | || | |||||| Sbjct 8385110 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 8385051 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || ||||||||||| || | | || |||||||| || Sbjct 8385050 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 8384991 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| | || | | | || ||| ||| || ||||| || || Sbjct 8384990 TGGATCTTGGCCTTCACATTTTCAATGGTATC---ACTGGGCTCAACCTCAAGGGTGATG 8384934 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 8384933 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 8384896 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || || ||||| ||||||||||| || | | || | ||||| Sbjct 8385338 AGCACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTACGACCATCC 8385279 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || ||||||||||| || | | || |||||||| || Sbjct 8385278 TCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCC 8385219 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | | || ||| ||| ||||| || || || Sbjct 8385218 TGGATCTTGGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCAACTTCCAGGGTGATG 8385162 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| || |||| |||||| Sbjct 8385161 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || || || || || || ||||||||||| |||| | || Sbjct 8386032 CCTGAGGCGCAGCACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 8385973 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || || || |||||||||||||| | | || || Sbjct 8385972 GCGACCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGGGGAATGCC 8385913 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || || ||| |||| | | || ||| ||| ||||| Sbjct 8385912 CTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATAGTATC---ACTGGGCTCAACTTC 8385856 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||| || |||| |||||| Sbjct 8385855 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153594393316365