Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq835 178 2e-39 seq495 102 1e-16 >seq835 Length=3194076 Score = 178 bits (196), Expect = 2e-39 Identities = 218/298 (73%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||| ||| | |||| || || | | || Sbjct 1702819 GGAAGGCAGTGAAGGGACAGCCCTTGACATTGTTGCAGATGAGCTTTTGCAAGGAGGCAG 1702878 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | || |||||||||||||||||||||||| | |||| Sbjct 1702879 TGTTGATGATGTCAAAGCCCACTTTGCCACCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1702938 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || || || ||||||||||| || |||| ||| | ||| Sbjct 1702939 AGCAGATGGCATTGCCCATCAGTCCCTTCAGGGAGAACGGGGCTCCCATCTCCACCATGG 1702998 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || ||||||||||| || || ||||||||||||| | || | ||||||||||| Sbjct 1702999 TTTCTCCGAAGATGGCACCTGGGCGTGGCTTTTCCACCAGAAGGCCTGGGTACAGCTCCA 1703058 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || | |||||| || || || || || || || || |||||||||||||| Sbjct 1703059 TGGCATCAATGTCTCCATACAGCTCCTCCAGCTCAGCTGCCATTTCCTTTTCTCCTGT 1703116 Score = 147 bits (162), Expect = 3e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | |||||| | ||||| ||||| || |||||||| ||| || || || || Sbjct 1704755 CCTATCAAGATGAGCCTGGTGGTTTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTCC 1704814 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 || | || || ||||| || | |||||| |||| |||||||| |||||||||||||| Sbjct 1704815 CGTCTGAGGACGTCGCAGACGCGGTTGTGCTCCCGCAGCCAGATCGTGGCGTACATCATC 1704874 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || || || ||||| || || |||| || || || | | |||| || || ||||| Sbjct 1704875 AGGCCTGGCACCAGCCCGAACACCTCCTGCCCCACCGAGAACCGCAGGTGCTCCGGCACG 1704934 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||| || || | ||| | ||||| ||| || |||| ||||| |||||||| || Sbjct 1704935 TGGGGGGGGTACAGCATCTCTGCCTGGGTGTCCTTCACCGTTGGGGGGTACATTTCTCCA 1704994 Query 9475 TCAATCATCTG 9485 ||||||||||| Sbjct 1704995 TCAATCATCTG 1705005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 || ||| || ||||||| | ||||||| ||||| |||||| ||||| | ||| | Sbjct 1707441 CTCACGTGTCGTGCAGTTTTCCCCGTAGAAGCCCGTCCTCGTGCAGTCGCACTGGTAGCG 1707500 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 || |||| |||||||||| |||||||| || || || |||||||| |||||||| Sbjct 1707501 ATCCGGCCCCGTCGTCATGCAGACCCCTCTGTTCTGGCAGGGGTGGGAGCAGCAAGGGTT 1707560 Query 10507 GGCT 10510 |||| Sbjct 1707561 GGCT 1707564 >seq495 Length=12029152 Score = 102 bits (112), Expect = 1e-16 Identities = 208/309 (67%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || |||| || | |||| |||| ||| |||||| || || || || Sbjct 1728571 CATCTGGCACGTGGAATGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCT 1728630 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | || |||| || ||| | || || | |||| || || || ||||| |||| Sbjct 1728631 TGAGCGACGCCGTCTTCACTATCTCAAAGCCAGTGGCTCCACCAAATGTACTGGGTTTCC 1728690 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| || | | || || || ||||| || ||||| || | Sbjct 1728691 AGTACTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCAA 1728750 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || ||| | ||||| |||| || || | || || || | Sbjct 1728751 TCTCCACCATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTG 1728810 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| || | ||||||||| || | || || ||||| |||| | Sbjct 1728811 GATAAAACTCCAGAGCATCAATGTCTCCGTACAGCTCTTCCAGCTCCGCAGCCTTCTCTT 1728870 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 1728871 CCTCTCCTG 1728879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716739562897600