Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq25286 98.7 2e-15 seq30879 95.1 3e-14 seq8027 89.7 1e-12 >seq25286 Length=3245 Score = 98.7 bits (108), Expect = 2e-15 Identities = 193/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 292115 TCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCACTCCCTCG 292174 |||||||| ||| ||| || || || || || || | || |||||||| || || Sbjct 1588 TCCTTGCGCGTCGTATTGGACTCGACGATGGCATGAATCAAATTCTGAGGCACATCC-CG 1646 Query 292175 A-AATTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGA 292233 | ||||||| |||| ||||| ||||| || || | || || | || || || || || Sbjct 1647 ATAATTAGCGAGCAACTGCTTGGTATCTTTCGGCAGACAGTAGCCGCCGTAGCCAAATGA 1706 Query 292234 AGGGTTTGAGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTT 292293 || || ||| | |||||| ||||| ||||| || || || ||||| | Sbjct 1707 TGGATTGTTGTAGTGCGCACCAATACGAGGATCCAGGCCGACCCCTTCGATGATCTGACG 1766 Query 292294 CGCATTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCAT 292353 || || || |||||| | |||| | || || ||||||||||| || || || ||||| Sbjct 1767 CGAATCCAAACCGTGGGTGGCTGCGTACGTGTCAAGTTCGTTGAAATACGCTACACGCAT 1826 Query 292354 TGCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCG 292396 || | ||| || || || || || || || || ||||| ||| Sbjct 1827 CGCCAAATAAGTATTTGAAAACAGCTTTACTGCTTCGGCCTCG 1869 >seq30879 Length=12587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 242/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 60945 CCGGATGAAATCTATAATATGGCTGCTCAAAGTTTTGTGGGAGATAGCTTTCACCAAGCT 61004 || |||||| |||||||| | |||||||||||| |||| | | ||| | | | Sbjct 11451 CCCGATGAAGTCTATAATCTTGCTGCTCAAAGTCACGTGGCGGTTTCTTTTGAAGAGCCG 11392 Query 61005 GAAGTGACTGCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATA 61064 ||| || || ||| || || | ||| || || | | || || ||||||| Sbjct 11391 GAATATACGGCCAATTCGGATGCATTAGGTACACTTCGAATTCTGGAAGCAATTCGTATT 11332 Query 61065 GCAGGTTTGAACTCTCGAA------TTTGTCAAGCATCAACATCTGAACTGTATGGAAAA 61118 || |||||||| | || ||| ||| ||||| ||||| || || || || Sbjct 11331 GCGGGTTTGAAAGATACAACAAAATTTTATCAGGCATCGACATCCGAGCTCTACGGCCTG 11272 Query 61119 GTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTT 61178 ||||||||||| ||||||| ||||| || || || || || ||| || |||| || Sbjct 11271 GTTCAAGAAATACCTCAAAAAGAAACAACGCCTTTCTACCCGCGTTCACCCTATGCCGTG 11212 Query 61179 GCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTA 61238 || || | || ||||||||||| || ||| | || | ||||| |||| | Sbjct 11211 GCTAAGATGTATGCTTACTGGATCACGGTCAACTACAGGGAAGCCTATGGCATGTACGCG 11152 Query 61239 TGTAACTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGT 61298 || ||| ||| ||||||||| ||| ||| | | | ||| | || |||||||| Sbjct 11151 TGCAACGGAATTCTTTTCAATCATGAGTCTCCGATTCGCGGTGAAACATTCGTGACTCGA 11092 Query 61299 AAAATTACG 61307 || |||||| Sbjct 11091 AAGATTACG 11083 >seq8027 Length=332615 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 176280 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 176339 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 176340 CCCACGTTGGGC 176351 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 197018 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 197077 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 197078 CCCACGTTGGGC 197089 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 200297 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 200356 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 200357 CCCACGTTGGGC 200368 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 201941 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 202000 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 202001 CCCACGTTGGGC 202012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054689295266180