Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq140712 143 5e-30 seq145387 120 6e-23 seq193866 118 2e-22 seq140813 96.9 7e-16 seq139306 82.4 1e-11 >seq140712 Length=381 Score = 143 bits (158), Expect = 5e-30 Identities = 208/288 (72%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 886 CTCAAGAAAGGCGTTGCCGAATACCAGATAGTCGAGCGCAAAGCGGCTGAAATCCTGACG 945 ||| | |||| ||||||||| |||| | | || ||||| |||||||||||||||| Sbjct 44 CTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAATCCTGCTT 103 Query 946 GGACAGCAGCGGGTGCGGGATGTAGGTGCTCGCGAGCACGTTGCGCTT-AACGTAAATCG 1004 ||||||||| |||| || || | ||||| | | | ||||||||| | ||| |||| Sbjct 104 TGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATCGT-GATCG 162 Query 1005 GTGAGCTGTGATGTACAGCAGAGCGCAGGCTCTTTGCCAGCCCGGAGAAGCTGACCGGCG 1064 |||| |||||||| || || | ||| | |||| ||||| ||| ||| || |||| Sbjct 163 GTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGAGATTGGCG 222 Query 1065 GCTCGTACCA---TTTGCCGTTACTGATGCACTCGACATAATCCAGAATGTCGCGCTTAT 1121 |||| ||||| | | || || | |||||| | ||||||||| || |||||| || Sbjct 223 GCTCATACCAGCGATCGACG--AC-GCAGCACTCCAGATAATCCAGTATTTCGCGCCGAT 279 Query 1122 CGAGTACCGGCACTGGCTCGCCAAAGGTGAACGCCTCCATTTTTTGCG 1169 | || | ||| | || ||||| ||||| |||||||| | | ||||| Sbjct 280 CCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTCGACGTGTTGCG 327 >seq145387 Length=359 Score = 120 bits (132), Expect = 6e-23 Identities = 238/351 (68%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 5251 CATCATGGCCGGGTTTAACGGTACCACCCGCGCTGACACCTCTGA---CCGTGTTAAAAA 5307 ||||||| ||| | ||||| |||| |||||| || || || | || || || Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 5308 CCCGATGCTGCAGGATGTGGCCGTTGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGGC 5367 | || ||||||| || | | |||||| |||||||| |||||| | || || | Sbjct 61 GC---TGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGA 117 Query 5368 GCGTGTGATGAGCAACATCACCGACGCTGACGGTAAAGTCGTTTCGGCAGTGATTCGCGT 5427 || |||||| || | | || ||||| | || || |||| | |||||| | Sbjct 118 GCAGGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCAT 177 Query 5428 CGGTAAAAACGGCGACTATGAGAACCTCGACGCACTGGTGATGGATGGTACCAATACCCT 5487 ||| | | || |||||| | ||||| || || ||||||||||||| |||| || Sbjct 178 CGGCACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCT 237 Query 5488 GATTGACGAGATTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCT 5547 ||| | || |||||||||||| | |||| || ||| | ||||| ||| ||| | Sbjct 238 GATCGCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTT 297 Query 5548 GGCCGACAAATATTTTCCGCTGGTCAACAAACAGCAGGAAAACACCGAGTC 5598 ||| ||||||||||| || || |||||| | | ||| ||| |||||||| Sbjct 298 GGCGGACAAATATTTCCCACTCGTCAACCAGGAACAGCCAAATACCGAGTC 348 >seq193866 Length=203 Score = 118 bits (130), Expect = 2e-22 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 2570 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACAT 2629 ||||||||||| || | | |||||| || |||| | ||||||||| || | |||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 2630 AAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAG 2689 |||||||| | ||| || ||||| |||||||| | || | ||||||||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 2690 GGTGCAGCCACCG-GCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGT 2748 | |||||| ||| |||| || || |||||| |||| ||||| || | || || | Sbjct 83 GTCGCAGCCGCCGCGCAA-CGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCT 25 Query 2749 CGCAGAGCTGGCCACCGGCGAG 2770 |||||||| || ||||| || Sbjct 24 CGCAGAGCACACCGCCGGCCAG 3 >seq140813 Length=325 Score = 96.9 bits (106), Expect = 7e-16 Identities = 215/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 26256 GAGTCACCAGCCCGCGCTGCGTTACCTATGTGGGAGGAGGATGCAGATAATACCCCCGGT 26315 || ||||||| || || | || || |||||||| || ||||| || ||||| || Sbjct 1 GAATCACCAGATCGGGCCGGCTTGCCAATGTGGGAAATCGACGCAGACAACACCCCAGGG 60 Query 26316 TTGCATGTGTATCGCCCAATTCTTAACTGGACACATGAAGACGTATTTGCCTTAGCTAAA 26375 |||| | || || | || | | |||| ||| | || || || || |||| || Sbjct 61 CTGCACATTTACCGTGCGATCTTGGATTGGAAACACGCTGATGTGTTCGCTATAGCCAAG 120 Query 26376 CGACACGGAATTAAACCGAACCCACTCTATCAGCAAGGTTGTAGCAGAGTTGGCTGCATG 26435 | |||| || || ||||| || || ||||| ||||| ||| || | ||||| || ||| Sbjct 121 CACCACGACATCAAGCCGAATCCGCTTTATCAACAAGGGTGTGGCCGTGTTGGTTGTATG 180 Query 26436 CCATGTATTCATGCAAGAAAATCTGAGCTGGCAGAGATTTTTGCTCGCTGGCCGGAGGAG 26495 || || | | | | || | || ||||| ||||| || || ||||| || ||| Sbjct 181 CCGTGCGTCAACGTGAACAAGGCGGAACTGGCGGAGATATTCAAACGTTGGCCCGAAGAG 240 Query 26496 ATTGCGCGCGTTGCAGAGTGGGAACGTCTTGTTGCTGCCTGTTCACGTCGGGGAAACTCA 26555 || || ||||| || |||||| || || || || ||| | |||||||| Sbjct 241 ATCGCCCGCGTCGCCCGCTGGGAAAAGCTGGTAGCGATGTGCTCAAGGAATGGAAACTCT 300 Query 26556 ACATTTTTCCCTTCGACTCACGA 26578 || ||||||||||| || || || Sbjct 301 ACCTTTTTCCCTTCAACGCAGGA 323 >seq139306 Length=319 Score = 82.4 bits (90), Expect = 1e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 10820 CTATACCCCGAAGACCAGCAGGAAGCTGTAGCCCGGACGCTCGCACTTGAGTCTGAACCA 10879 || ||||| || || | | |||||| || ||| ||||| | |||||| || || Sbjct 298 CTGTACCCGGAGGAAGAACGGGAAGCAGTGCGCCGCACGCTGGGCTATGAGTCCGAGCCG 239 Query 10880 ATTGTTAAATTGCTGCAGGAAAACGCCTACCGTGAGGTTATCTGGCGTCAGCGTGTTAAT 10939 || || ||| | ||||| ||| ||||||||||||||| | | || ||||| || ||| Sbjct 238 ATCGTCAAAGTCCTGCAAGAATCCGCCTACCGTGAGGTGTTGTTACGCCAGCGCGTCAAT 179 Query 10940 GAAGCTGCTCGCGCAGGCATGCTGGCTTATGCCA-GAGATAGCGACCTCGAT 10990 || || || | || | ||| |||| || |||| ||| |||||||||||| Sbjct 178 GAGGCAGCGCAGGCCGTAATGGTGGCCTACGCCATGAGC-AGCGACCTCGAT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97606383683352