Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq7104 188 9e-43 seq3835 125 9e-24 >seq7104 Length=19532596 Score = 188 bits (208), Expect = 9e-43 Identities = 248/341 (73%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114 ||||||| |||||||||| || || | ||||| | || | ||||||| | || Sbjct 2377741 GGAGCAGCAGCTCGATGTCGTCCTGCAGCTTGATGGTCTCGAAGTGTCGGCTGTAGCGGC 2377682 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | | ||| |||||| | ||||| | |||||||||||||||||||| |||||||||| Sbjct 2377681 GGAAGGGAACGCCGTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGC 2377622 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| || |||||| ||| ||| |||| | ||| |||| ||||||| Sbjct 2377621 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGT 2377562 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293 || ||||| ||||||| ||||||||||| ||||| || || || | | ||||| Sbjct 2377561 GCGGGAAGGGCAGCGCCTCTCTCAGGAAGGCGAACAGCGGGTGCGCGCCCTTC-CCGTTC 2377503 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||||||||||||| | | ||||| || | ||||||||| || || || |||| | Sbjct 2377502 ACCTCGCACTTCTCGAACATGGTGAAGTTGGGTTTGAAGCCGTTGCCGGGCCGCACGTAC 2377443 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| || ||| |||||| | || |||||| ||||| Sbjct 2377442 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 2377402 >seq3835 Length=59006440 Score = 125 bits (138), Expect = 9e-24 Identities = 124/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC 83445 |||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 4864223 GTTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGTGGG-- 4864280 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 ||| || |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| || Sbjct 4864281 TAG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGTGA 4864339 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||| |||||||||||||| | ||||| || || |||| Sbjct 4864340 CGCCACGTTCTCGATGAGGACCACCCGCCCGCGGAAGA 4864377 Score = 84.2 bits (92), Expect = 3e-11 Identities = 190/277 (69%), Gaps = 14/277 (5%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 || |||| ||||||| ||||||||| |||||||||| | ||| ||| | ||| || Sbjct 4863894 CCCTCAGGCCCCACCAGGAACTTCTCAAAGTTCCAGGAGATGTCAGAGCGCCGCACAGGG 4863953 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGCTAGGCGCCG 83243 ||| | | || |||| ||| || || ||| || || || || ||| || | Sbjct 4863954 CTCCACACCAGGAAGCGGGGTTCGGCCATCAG-GTGGTC-TGCCTCATCCACAGGGGCGG 4864011 Query 83244 GCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTC 83298 ||||| |||| || ||| |||| |||| || || || |||| | |||| |||| Sbjct 4864012 GCAGGTGGGCCT-TC--AGGTAGGCAAAGACGGGGTGGGTGTCCTTCC--CGTTCACCTG 4864066 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || || ||||| || Sbjct 4864067 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGCACATGCTTGAG 4864126 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | | | |||||| | || | |||| |||||| Sbjct 4864127 GCAGTTGAGGATCTCCTCGTTGGTGCCGTTCTCCTGG 4864163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607036722791440