Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq145387 116 8e-22 seq201653 87.8 4e-13 seq193866 86.0 1e-12 >seq145387 Length=359 Score = 116 bits (128), Expect = 8e-22 Identities = 226/334 (68%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 4505 CATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTCTGACCGCAGCAGCAATCC 4564 ||||||| ||||| |||||| | || ||| ||| || || || | ||| Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 4565 GATGTTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCGCAATGAAGCACCGGCGCG 4624 | |||||||||| || |||||||| |||||||| |||||| | || || | || Sbjct 61 GCTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCA 120 Query 4625 CGTGATGAGCAAGGTCACTGACGAGGAAGGCCGCACCACCTCTGAGGTTATCCGCGTGGG 4684 |||||| ||||| | |||||| ||| || || || || ||| | || Sbjct 121 GGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGG 180 Query 4685 TAAGGGCGGTGATTATGCCAGCCTTGATGCACTGGTGATGGATGCGACCAACAACCTGAT 4744 | | ||||| ||| || ||| ||||| |||||||||||||| ||| | ||||| Sbjct 181 CACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGAT 240 Query 4745 TGAACCGTGGTATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTACTGGC 4804 | | ||||||||||| ||| | || || || | |||| || ||| || |||| Sbjct 241 CGCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGC 300 Query 4805 GGACAAGTATTTCCCCATCGTCAACAAGGAGCAG 4838 |||||| |||||||| |||||||| |||| ||| Sbjct 301 GGACAAATATTTCCCACTCGTCAACCAGGAACAG 334 >seq201653 Length=261 Score = 87.8 bits (96), Expect = 4e-13 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 2218 GGGATCCAGAAAATCTCATCGACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAG 2277 |||||||||||| || || | ||||| | ||| | | ||| |||||||||||| Sbjct 240 GGGATCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCGGCCCTGTGCGGTGTTGGAG 181 Query 2278 TTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTC 2337 ||||||||||||||| || || || ||| ||| ||||| || | || ||| | Sbjct 180 TTGGTGCCGAGAAAATGCAATTCAGCCGCGT--TTG-GCAGGATGATGGTTTCCCCGCGC 124 Query 2338 AGGTCAACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGT 2397 || || || |||||| | ||||||||| ||||||| | |||| | |||||| Sbjct 123 AGCTCCACATCAACCTCTTGCGCAAAGGCGGTGATGTAGTTTTTGAACTGGTGCGCCTGC 64 Query 2398 GTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGC 2444 | || ||| || | ||| ||||| ||| | || || | |||||| Sbjct 63 GCCTTGGAGGCGGAAACAAACATCTGATTACGCCCCGTGTCCAGGGC 17 >seq193866 Length=203 Score = 86.0 bits (94), Expect = 1e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1833 GCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAACAAATTCACACAT 1892 |||||| |||| || | | |||||| || || | | ||||| | || | ||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 1893 GAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAACAG 1952 ||||||||| | |||||| || |||||||||| | |||| || | ||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 1953 CGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCGCCACTGGCCGTCCGC 2012 ||||||||| || || || |||||| |||| ||||| || | || |||| | Sbjct 83 GTCGCAGCCGCCGCGCAACGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCTC 24 Query 2013 ACAGAGAAGCCCACCGGCAAGG 2034 ||||| | || ||||| ||| Sbjct 23 GCAGAGCACACCGCCGGCCAGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107081089534260