Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq142870 248 9e-61 seq8367 154 2e-32 seq7705 145 8e-30 seq2002 120 3e-22 seq185232 95.1 1e-14 seq2976 87.8 2e-12 >seq142870 Length=314 Score = 248 bits (274), Expect = 9e-61 Identities = 239/307 (78%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 65729 GCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCACGCCCTTTTGC 65788 ||||||||||||||||||||||||||||| || || ||| |||||||||||||| ||| Sbjct 7 GCCATCAGCTGGCCGAAGTTGCCCTTGTAGGGGTCATCCCAGGCGGTCACGCCCTTCTGC 66 Query 65789 GGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTTGAAGTCGTCGCGGCCCGCG 65848 | || |||| || || |||| ||||| | || | |||||||| ||||||||| Sbjct 67 GCTTTTTGCAGCGCGGCGAACGGATCGTGGATCGAGACTTTGAAGTCCTCGCGGCCCTGA 126 Query 65849 CACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGTCGTTGATGCCG 65908 || |||||||||| |||| ||| ||||| |||| || ||||||||||||||||| Sbjct 127 CAGGAGCGCTGCAAGGCCTGGAAACTGCCTTCGATCTCTTTCAGGCTGTCGTTGATGCCA 186 Query 65909 TCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGGGCACGGGCACC 65968 | |||||||| ||||| | |||||||||||||| || || ||||| || | || | | Sbjct 187 TTGCCGCCGCAGATCGGGATAAAGCCGTACAGCAGGTGGGTCAGGTTTTGCGCCGGGATC 246 Query 65969 TTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGACGAAGTAGGCGGCCACCACC 66028 |||||| ||| || | ||||||||| ||||||||||||||||| || | | || || Sbjct 247 TTGTCGACGGTGAAATTGCGCCCGTAAACGCCCCACTCGACGAAATAAGAACCGACGACT 306 Query 66029 TTGCCGG 66035 ||||||| Sbjct 307 TTGCCGG 313 >seq8367 Length=9740059 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 8892990 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 8893049 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| ||||| | ||||| || ||||| || | || || Sbjct 8893050 GACACCATTGAAAACG-TGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 8893108 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 8893109 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 8893168 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| ||||| |||| || ||| Sbjct 8893169 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 8893217 Score = 152 bits (168), Expect = 5e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || || || ||||| ||||||||| |||| || || | Sbjct 8892758 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 8892817 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | ||| | |||| ||||| | ||||| || ||||| || | || Sbjct 8892818 CAGTGACACCATTGAAAATGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGA 8892877 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 8892878 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTA 8892937 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| ||||| || ||| ||||| ||||||| ||| Sbjct 8892938 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGGC 8892989 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 8893218 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 8893277 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| || ||||| || | || ||| Sbjct 8893278 GACACTATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 8893337 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 8893338 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 8893397 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| || ||||||||| ||||||| ||| Sbjct 8893398 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGAGGGGAGGC 8893445 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| |||||||| | || || || ||| Sbjct 8893446 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 8893505 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| ||||| || | || ||| Sbjct 8893506 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 8893565 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 8893566 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 8893625 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| ||||| | || || ||| Sbjct 8893626 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGGC 8893673 >seq7705 Length=13065498 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || | || ||||| ||||||||| | || || ||| || Sbjct 4578189 AACATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4578248 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 4578249 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 4578308 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | |||||| || |||||| Sbjct 4578309 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTAC 4578368 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 4578369 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4578418 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || |||||||| | || ||||| | | Sbjct 4578420 ATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTCGAGCCTAGT 4578479 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| |||||||| ||| | || ||| Sbjct 4578480 GACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 4578539 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || ||||| |||||||| || | |||||| || ||||||||| Sbjct 4578540 CAAAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 4578599 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 4578600 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4578646 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || || ||| ||| Sbjct 4578648 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGTTGGAGGTTGAACCCAGT 4578707 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 4578708 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 4578766 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||| || |||||||| Sbjct 4578767 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAA 4578826 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| || ||||| ||||||| || Sbjct 4578827 CATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGGGGTGG 4578874 >seq2002 Length=109662234 Score = 120 bits (132), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||||| ||||||||||| ||||||| ||||||||||| || |||| ||| Sbjct 93263694 GAACCGCTGCTGCGGGAGAACCCCCGGAGGTTCGTCATTTTCCCCATCCAGTACCATGAC 93263753 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||||| |||||||| ||||| ||||| || || ||||| | ||||||||| Sbjct 93263754 ATCTGGCGGATGTACAAGAAGGCTGAGGCTTCCTTTTGGACGGCAGAGGAGGTG 93263807 >seq185232 Length=256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 65179 GCCGAGCACGATCTTGTC-GGCGGGCGCGCCCTGCGCCAACAGCCGGCGCAC-CGCGCCG 65236 ||||| ||||||||| | ||| | ||||||||| || |||| ||| | ||||| Sbjct 256 GCCGACGACGATCTTGCCCGGCTTGA-CGCCCTGCGTCAGCAGC----GCATTCACGCCG 202 Query 65237 T---CGGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGG 65293 | | | |||||||| || || ||| | |||||| | |||||||||||| || Sbjct 201 TTCACCGTGGTGTAGGCGGTATCCGGTTTCCAGGCCGGCGCATTCAGCGCGGTCTGATGC 142 Query 65294 CCCAGCTCGGT--GGTGGACCACGCCCCCTTGAAGTCGTAGCTCATCAAAAAGATGCGGT 65351 ||||| | | | | || | || || | ||||||||||||||||| |||||| | | Sbjct 141 CCCAGGTTCTTCAGATCGA--AGGCGCCATAGAAGTCGTAGCTCATCAGGAAGATGTGAT 84 Query 65352 CGAGCGAGCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGA 65411 | | |||| ||||| ||| |||| | |||||||||| | ||| |||| || Sbjct 83 CCATCGAGTTCTGCGCAACGTTGTAAGCCACCTTGTCGATCTTGTCCTTGCCAGCGCTGA 24 Query 65412 TGGCGCTGGTCAGCTCGTAC 65431 ||||| ||||||||| ||| Sbjct 23 TGGCGGAGGTCAGCTCATAC 4 >seq2976 Length=93210757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 73918846 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTT 73918787 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || ||| ||| | Sbjct 73918786 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATCAGCAGAG 73918727 Query 117162 ACGAGG 117167 | |||| Sbjct 73918726 ATGAGG 73918721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513729662651360