Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq142870 150 2e-31 seq8367 138 1e-27 seq7705 111 1e-19 >seq142870 Length=314 Score = 150 bits (166), Expect = 2e-31 Identities = 209/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 21584 TACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCGCCG 21643 || || ||||| ||||| || ||| | | | ||| ||||||||||| | ||||||| Sbjct 293 TATTTCGTCGAGTGGGGCGTTTACGGGCGCAATTTCACCGTCGACAAGATCCCGGCGCAA 234 Query 21644 AATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAACGAC 21703 || || | || | || |||||||| | ||||| ||||| ||| | |||||||||||| Sbjct 233 AACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACGAC 174 Query 21704 GCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGGGCC 21763 || ||| | | |||||||| |||| ||||| || || ||| ||| || | Sbjct 173 AGCCTGAAAGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCTGTCAGGGCCGCGAG 114 Query 21764 GATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGCGTC 21823 || ||||| || | || |||||||||| ||||| | ||||| | || |||||||| Sbjct 113 GACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGGGCGTG 54 Query 21824 TCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAA 21876 | | ||| | || || ||||| |||||||| || || |||||||| |||| Sbjct 53 ACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATGGCGCTGAA 1 >seq8367 Length=9740059 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||| ||| Sbjct 8892974 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 8892915 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| || | ||||||||||||||| ||||| |||||||| Sbjct 8892914 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 8892855 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || | ||| | |||||| || ||| ||||||| ||| | || Sbjct 8892854 TTGGATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 8892795 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| ||||||||| Sbjct 8892794 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8892761 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || |||||| || Sbjct 8893202 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 8893143 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||||||||| ||||| |||||||| Sbjct 8893142 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 8893083 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || | ||| | |||||| || ||| ||||||| ||| | || Sbjct 8893082 TTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 8893023 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| ||||| || || ||||| ||||||||| || Sbjct 8893022 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 8892986 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| || || ||||| || Sbjct 8893430 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 8893371 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||||||||| ||||| |||||||| Sbjct 8893370 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 8893311 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||| | ||||| || || ||||| | ||| | || Sbjct 8893310 TTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 8893251 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || ||||| ||||||||| Sbjct 8893250 CTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 8893217 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || || ||||| || |||||||| || || |||||| || Sbjct 8893658 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 8893599 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | ||||||||||||||| ||||| || ||||| Sbjct 8893598 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 8893539 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | || | |||||| || ||| ||||| | || | || Sbjct 8893538 TTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGT 8893479 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| || || ||||| ||||| ||||||||| || Sbjct 8893478 CTTGCCAGTAAGGGTTTTCACAAAGATCTGCATGCCT 8893442 >seq7705 Length=13065498 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||||| ||| Sbjct 4578404 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATC 4578345 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | |||||||||||| || |||||||||||||| Sbjct 4578344 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTC 4578285 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| ||| || || || ||||| | ||| | || Sbjct 4578284 CTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGT 4578225 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| |||| || || || || ||||||||| Sbjct 4578224 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCATG 4578191 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||||| || || |||||||| || || ||||||| ||| Sbjct 4578632 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATC 4578573 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || ||||| |||| || | |||||||| || || |||||||||||||| Sbjct 4578572 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGGGGAATGCCCTCCTTGTC 4578513 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | || | |||||| | ||||||||| | || | || Sbjct 4578512 CTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGAGTGATGGT 4578453 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| || || ||||| |||||||| Sbjct 4578452 CTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 4578420 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| || || ||||||| ||| || | Sbjct 4578855 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCA 4578796 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | |||||||||||| || |||||||||||||| | Sbjct 4578795 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGA 4578736 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || || ||||| | || | || |||| Sbjct 4578735 TCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATGGTCTTGC 4578676 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| || || ||||| |||||||| Sbjct 4578675 CAGTCAAGGTCTTCACAAAGATCTGCAT 4578648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432607519681912