Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq8220 109 6e-19 seq6801 104 3e-17 seq3581 98.7 1e-15 >seq8220 Length=10730484 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 153684 GGGGTTTGGAGGCCAGCTTTCATAAAGGGCAGGAGGAGCTGTTAGAGTATTGTGAAGCAC 153743 |||| |||||| | ||| || ||||||||||||||||| ||||| ||||| | | Sbjct 4929746 GGGGCCTGGAGGGCTCCTTCTATGAAGGGCAGGAGGAGCTGAGGGAGTACTGTGAGGTGC 4929687 Query 153744 TTTATTTACCACAACCTGTTAAGATGGAAATAGTAGGCATTGTAGACGATGTGCCATGTC 153803 | || | || || || |||||||| | || |||| || || |||||||| |||| Sbjct 4929686 TCTACCTGCCGCAGCCCACCAAGATGGAGGTGGTGGGCACGGTGGATGATGTGCCCTGTC 4929627 Query 153804 TGGCAACGGGGATGCAATTACTCATTCTTGTTGCCGAGGGGGGAGAGGTATATGCCTATG 153863 |||| |||||| ||| | |||| || ||||| ||| | || ||||| ||||| || | Sbjct 4929626 TGGCCACGGGGCAGCAGCTTGTCATCCTCGTTGCTGAGAGTGGGGAGGTGTATGCTTACG 4929567 Query 153864 AAGAAGATACTCTGCATAAGTTAGCCACGA 153893 | || || || || || || | |||| || Sbjct 4929566 AGGAGGAGACGCTACACAAAGTTGCCAAGA 4929537 >seq6801 Length=23716164 Score = 104 bits (114), Expect = 3e-17 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 2495 CCCCGTGCACGGGGTCAGTGCCATCTTGTGGTCTCGGCTTTCTTTTTTCCCCCTTTTGCA 2554 || ||||| | || | |||||||| ||| |||||||| |||| ||| ||| ||| Sbjct 19666382 CCACGTGCGTGCGGCCGCTGCCATCTGCTGGGCTCGGCTTAACTTTTATCCCGTTTCGCA 19666441 Query 2555 CGAAGAGTCAGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGATGGAGAACCGTT 2614 ||||| || ||||||||||| | |||||| | |||||||| ||| ||| | || Sbjct 19666442 CGAAGGATCGGTGAACTTGGG-TGCTTAATTACGTTTTAATTGGGCGGCGGAAAGCCACG 19666500 Query 2615 GCTAGAATATGTGGGGATAGAGAAGTCCGATACCCTCAGAAATGTGCGAGTCCTGCGGGT 2674 || |||| | | || || |||||||||||| ||| || |||||| |||| |||||| Sbjct 19666501 GCCAGAACACGCGGATATGAAGAAGTCCGATATGCTCGGAGATGTGCCGGTCCGGCGGGT 19666560 Query 2675 AGAATCG 2681 || ||| Sbjct 19666561 CGAGTCG 19666567 Score = 104 bits (114), Expect = 3e-17 Identities = 136/187 (73%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 138939 CGATTCTACCCGCAGGACTCGCACATTTCTGAGGGTATCGGACTTCTCTATCCCCACATA 138998 ||| || |||||| |||| |||||| || ||| |||||||||||| || || | | Sbjct 19666567 CGACTCGACCCGCCGGACCGGCACATCTCCGAGCATATCGGACTTCTTCATATCCGCGTG 19666508 Query 138999 TTCTAGCAACGGTTCTCCATCGCGCAATTAAAGCACGATTAAGTACCCCAAGTTCACTGA 139058 |||| || || | ||| ||| |||||||| | |||||| | ||||||||||| || Sbjct 19666507 TTCTGGCCGTGGCTTTCCGCCGCCCAATTAAAACGTAATTAAGCA-CCCAAGTTCACCGA 19666449 Query 139059 CTCTTCGTGCAAAAGGGGGAAAAAAGAAAGCCGAGACCACAAGATGGCACTGACCCCGTG 139118 |||||||| ||| ||| |||| |||||||| ||| |||||||| | || | | Sbjct 19666448 TCCTTCGTGCGAAACGGGATAAAAGTTAAGCCGAGCCCAGCAGATGGCAGCGGCCGCACG 19666389 Query 139119 CACGGGG 139125 |||| || Sbjct 19666388 CACGTGG 19666382 Score = 98.7 bits (108), Expect = 1e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 1371 AGGTAGATACAGGACATGTTTTAACGAGGTTCTGCGCTAAATCCAGGGCGGGAAAGCTCA 1430 ||| |||||| ||| ||||||||||| ||||| ||| ||| || |||| | |||||||| Sbjct 19665252 AGGCAGATACGAGACGTGTTTTAACGACGTTCTTCGCGAAACCCGGGGCCGAAAAGCTCA 19665311 Query 1431 GCCCGCATCTCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGC 1474 || |||| | |||| ||||||||| || ||||||| ||||||| Sbjct 19665312 GCGCGCAACCGGCAG-CCCCGGATCGGAGCCCGCAGCCCCCGGC 19665354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 140146 GCCGGGGTCTGCGGGATCGGATCCGGGGGCTGCGAGATGCGGGCTGAGCTTTCCCGCCCT 140205 ||||||| ||||||| || ||||||||| |||| | |||| |||||||||| | |||| Sbjct 19665354 GCCGGGGGCTGCGGGCTCCGATCCGGGG-CTGCCGGTTGCGCGCTGAGCTTTTCGGCCCC 19665296 Query 140206 GGATTTAGCGCAGAACCTCGTTAAAACATGTCCTGTATCTACCT 140249 || ||| ||| ||||| ||||||||||| ||| |||||| ||| Sbjct 19665295 GGGTTTCGCGAAGAACGTCGTTAAAACACGTCTCGTATCTGCCT 19665252 >seq3581 Length=70658698 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 3175 ACTTACATAATTTCAGTCCTCCTGCAGTGTATACCCGGTGGTATCACGTCAACAGCGATA 3234 |||||||| || || |||||| |||||| ||||||||||| ||||||||| |||| Sbjct 15497570 ACTTACATGATCTCCTTCCTCCGGCAGTGAATACCCGGTGGCGTCACGTCAATGGCGAGG 15497629 Query 3235 ATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTCACGCACTTGCACCTCTTG-TCGAC 3293 || |||||| ||| | | | ||| ||||| || ||||||||||||||| | | | Sbjct 15497630 ATGAGCCCCAGGCCGATGACCTGGGCAGTCACTTTGACACACTTGCACCTCTTGTTGGTC 15497689 Query 3294 AGCGAGACTCTCCAGTGA 3311 ||| || ||||||||||| Sbjct 15497690 AGC-AGGCTCTCCAGTGA 15497706 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367 ||||||||||| || |||| | | ||||||||||||||| || ||||| ||| | | Sbjct 15497706 TCACTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGTGTCAAAGTGACTGCCCAGGT 15497648 Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427 | ||| |||||| || |||| ||||||||| ||||||||||| |||||| |||| Sbjct 15497647 CATCGGCCTGGGGCTCATCCTCGCCATTGACGTGACGCCACCGGGTATTCACTGCCGGAG 15497588 Query 138428 GACTGAAATTATGTAAGT 138445 || || || |||||||| Sbjct 15497587 GAAGGAGATCATGTAAGT 15497570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567423579419040