Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6870 327 8e-85 seq9582 91.5 1e-13 >seq6870 Length=19584067 Score = 327 bits (362), Expect = 8e-85 Identities = 695/1026 (68%), Gaps = 20/1026 (2%) Strand=Plus/Minus Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 || |||||| |||| || ||| | ||||| || ||||||||| |||||||| || Sbjct 5963653 CGCGGGGACGAGGAGGCGGTGCGGGACGCCCTGCTGAGCAACCTGGAGGTGAAGAACAAA 5963594 Query 107604 CGGTCGCCTCTCACTGGCACCTAT---TACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 || ||| || | || || | ||||| ||||| || | ||||| | |||||| Sbjct 5963593 AGGCAGCCCCTGA---GCCCCGAGGAGTACCTGAACATGACGAAGGACTGCGGCCGCTTC 5963537 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||| || | ||| ||||||| ||||| | || ||| ||||||||||| Sbjct 5963536 AAGGAGAGCCGGCGCTACATCGAGTTCCCGCTGAGCGAGGAGGAGGCCGACTTCCCCATC 5963477 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||| |||| | ||||| || | || || ||||| ||||| || | Sbjct 5963476 GCCTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCGCTCTC 5963417 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 || ||||| |||||| | ||||| ||||||||||| | ||| | || | | ||| | Sbjct 5963416 TACGCCCCGCAGAACGTCTACTGCGTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAG 5963357 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 |||| || |||||| ||||||||||||| |||||| ||||||| ||| Sbjct 5963356 CAGGCCGTGCGGGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAG 5963297 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 ||||| || |||||||||||| | |||| || ||||| ||||| ||| ||| || Sbjct 5963296 AGCGTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCGGGACCTG 5963237 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 || |||||| | ||||| ||| ||| | || || || || || || ||||||||||| Sbjct 5963236 CTGCAGAGCCCCGTGCCCTGGCGCTACGTCCTCAACACGTGTGGCACCGACTTCCCCATC 5963177 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCT-CAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 |||||||| || |||||||||| || || | || || || |||| ||||||| ||||| Sbjct 5963176 AAGACCAACGCGGAGATGGTCCGCGCGCTGCGAG-TGCTGCAGGGGCAGAACAGCATGGA 5963118 Query 108080 GTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACC-GCTATGAGGTGACAG 108138 ||| ||| || | | | ||| | | |||||||| |||| || | | || || Sbjct 5963117 GTCGGAGAAGCCGACAGCCTACAAGCAGGAGCGCTGGAAGTACCGGCACCGCGTGGAGAG 5963058 Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCC-TC-CCCCTGATAATTTACCCATGTT 108196 || | | || || || | |||| ||| || || ||| | || ||||| Sbjct 5963057 CTTCA-TCTCCCGCACGGCCACGGAGAAGCCCCCGTCGCCGCTG--CCCTCGCCGATGTT 5963001 Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256 ||| || | ||||| | | |||| | || ||||| || | || || | || |||| Sbjct 5963000 CACGGGCAGCGCCTACATCGCGGCCACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCC 5962941 Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316 | | | | | || |||| ||| |||||||| ||||||||||| ||| | || Sbjct 5962940 CGCGGCGCGGCGCTTCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTG 5962881 Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376 |||||| || | || || || | |||| ||| | || || | || ||||| || Sbjct 5962880 GGCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCGCACAACGACAAGTTCCA 5962821 Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436 | || ||||||| || | || | || |||||||||||||||| || || || Sbjct 5962820 GACGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGCGACAC 5962761 Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTG---GAATCCATCGGAGGGCCATCTGCAT 108493 ||| || ||||| || | |||||| | | | |||| || || | ||||| | Sbjct 5962760 GAGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCAG---CGTCTGCGT 5962704 Query 108494 TTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTT 108553 ||||||||||||||| || |||||| || | | | | || || |||| |||||||| Sbjct 5962703 CTACGGGGCCGGGGACGTGGCCTGGATGCTGCGGCAGCGCCAACTGCTGGCCAACAAGTT 5962644 Query 108554 TGACCC 108559 ||||| Sbjct 5962643 CGACCC 5962638 >seq9582 Length=68461266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 34026022 TTGAGTGGGCAAAAGACACTTACAGCCCTGATGAGTACCTATGGGCAACAATTCAGAGAA 34026081 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 ||| || | || || ||||| || | |||||| || | || || |||| | Sbjct 34026082 -TCCCTGACGTCCCAGGTGCTGTTTCTTCTAATGAGAAGTATGACGTTTCTGATATGAAT 34026140 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || | |||||| | ||||||||||||||| ||| |||||||| | || || || Sbjct 34026141 GCACTGGCCAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGATGTGTCTAAAGGTGCACCC 34026200 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||| ||| ||| | ||| | | |||| | | || | || |||||| Sbjct 34026201 TACCCACCATGCAGCGGAGTTCATGTTCGCTCTGTCTGTGTGTTTGGCGTAGGAGACCTG 34026260 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||||| || | ||||| ||| |||| || || |||||||| Sbjct 34026261 AACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 34026304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347287100559564