Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8367 129 5e-25 seq7705 118 8e-22 seq142870 105 5e-18 >seq8367 Length=9740059 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| |||||| ||| ||||||||| ||||||||||| Sbjct 8893217 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 8893158 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || || || |||| || ||| || |||||||| Sbjct 8893157 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893098 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| ||||| ||| || | | | |||| | ||| || Sbjct 8893097 AATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 8893038 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 8893037 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8892989 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 8892970 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 8892911 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || ||| || |||||||| | || |||||||| Sbjct 8892910 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGG 8892851 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||| ||||| | ||| || |||||| Sbjct 8892850 ATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 8892791 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || ||||| |||||||||||||| |||||||| Sbjct 8892790 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 8892759 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| || |||| | || |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 8893445 GCCTCCCCTCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 8893386 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || || || |||| || ||| || |||||||| Sbjct 8893385 CAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893326 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| || || ||| || | | |||| | || || Sbjct 8893325 AATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAAC 8893266 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | ||| || |||||||| || || |||||||||||||| |||||| Sbjct 8893265 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 8893217 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | |||| |||||| ||| || ||||| ||||||||||| Sbjct 8893673 GCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 8893614 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| |||| ||||| || || || || || |||| || ||| || |||||||| Sbjct 8893613 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893554 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || ||||| || || ||| || | | | | |||| | ||| || Sbjct 8893553 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 8893494 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| | || || |||||||| || || || ||||||||||| |||||| Sbjct 8893493 CTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCATG 8893445 >seq7705 Length=13065498 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 4578400 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCC 4578341 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || ||||| || | |||||||||||| Sbjct 4578340 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 4578281 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | |||||||||| ||| || |||||| Sbjct 4578280 ATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTG 4578221 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| |||||||| ||||| ||||||||| Sbjct 4578220 CCAGTCAAGGTCTTCACGAAGATCTGCATGTTG 4578188 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| ||||||||||| ||| ||| | || ||| Sbjct 4578628 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCC 4578569 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || || || || || || | |||||||||||| | Sbjct 4578568 AGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 4578509 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | | ||| ||||||| || || ||||| Sbjct 4578508 ATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGAGTGATGGTCTTA 4578449 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| |||||||||||||| ||||| Sbjct 4578448 CCCGTCAAGGTCTTCACAAAGATCTGCAT 4578420 Score = 102 bits (112), Expect = 6e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| ||||||||||| ||| ||| | || |||| Sbjct 4578855 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCA 4578796 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || ||||| || | |||||||||||| | Sbjct 4578795 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGA 4578736 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | || ||||||| || || ||||||| Sbjct 4578735 TCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATGGTCTTGC 4578676 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||||||||||| ||||| Sbjct 4578675 CAGTCAAGGTCTTCACAAAGATCTGCAT 4578648 >seq142870 Length=314 Score = 105 bits (116), Expect = 5e-18 Identities = 200/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 7046 GCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTACGCCTCCACACCCTTTTGT 7105 |||||||||||||| || || ||||| || || || || | || ||| ||||| || Sbjct 7 GCCATCAGCTGGCCGAAGTTGCCCTTGTAGGGGTCATCCCAGGCGGTCACGCCCTTCTGC 66 Query 7106 GGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGAAATCGTCTCGGCCCGCG 7165 | ||| || | ||| | || |||||| || |||||||| || || |||||| Sbjct 67 GCTTTTTGCAGCGCGGCGAACGGATCGTGGATCGAGACTTTGAAGTCCTCGCGGCCCTGA 126 Query 7166 CACGATCTTTGCAACG-CTTCAAACGACCCCGGCACCTGTTTCAAGGCGTCGTTGAGTCC 7224 || || | ||||| | || |||| || | | || ||||| | |||||||| || Sbjct 127 CAGGAGCGCTGCAAGGCCTGGAAACTGCCTTCG-ATCTCTTTCAGGCTGTCGTTGATGCC 185 Query 7225 GTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGAGATTGGGCACGGGCAC 7284 | || ||||| || || | ||| |||||||||| ||| | || || || | || | Sbjct 186 ATTGCCGCCGCAGATCGGGATAAAGCCGTACAGCAGGTGGGTCAGGTTTTGCGCCGGGAT 245 Query 7285 CTTGTCTGCGG-GAAACTGCCGTCCGTACACACCCCACTCCACAAAGTA 7332 |||||| ||| |||| || || ||||| || |||||||| || || || Sbjct 246 CTTGTCGACGGTGAAATTG-CGCCCGTAAACGCCCCACTCGACGAAATA 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393961562767006