Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq8367 114 1e-20 >seq1 Length=190651702 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| || ||||| || || || || || |||||||| || || || || Sbjct 189193111 CACCTCGTCTTTGCTGGTATACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGT 189193170 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||| |||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 189193171 CCCCAAGTTCTGCTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTACAGCATGTAAGGCGT 189193230 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||| ||||| ||| ||||||||||| || Sbjct 189193231 GCCAGTCTCTGTCTGTGACTCGATGATGGC 189193260 Score = 102 bits (112), Expect = 7e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 ||||||| | |||| || ||||| || ||||| || || |||| || || | ||| | Sbjct 189194386 TTTCAACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCAC 189194445 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 || ||| ||||| || |||||||| || || || | ||| || || | |||| |||| Sbjct 189194446 GCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTCCAGGTGCC 189194505 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 ||||||| ||||| | |||||| || || ||||||| || Sbjct 189194506 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCTGAT 189194544 >seq8367 Length=9740059 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 8892758 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 8892817 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| || || | ||| |||||||||||| | || ||||| Sbjct 8892818 CAGTGACACCATTGAAAATGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGA 8892877 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | || || ||||||||||| ||| ||||||| | | | || || || | Sbjct 8892878 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACT 8892936 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || || || || || || ||||| || | |||||||| || Sbjct 8892937 ACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 8892988 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 8892989 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 8893048 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| |||||||||||| | || ||||| || Sbjct 8893049 TGACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 8893108 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 8893109 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 8893168 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | ||||| || || Sbjct 8893169 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 8893216 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || |||||| | || |||||||| Sbjct 8893217 CATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAACCCAG 8893276 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || | || |||||||||||| | || ||||| || Sbjct 8893277 TGACACTATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCA 8893336 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| |||||||| || || || || || Sbjct 8893337 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAA 8893396 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || || || || ||||| | | |||||||| || Sbjct 8893397 CATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGAGGGGAGG 8893444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444477655905120