Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq201653 114 3e-21 seq201369 95.1 3e-15 >seq201653 Length=261 Score = 114 bits (126), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 3464 TCCAGAAGAACTCGTCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGG 3523 ||||||| | ||||| | || | ||||| | |||||| || || | ||||| Sbjct 236 TCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCGGCCCTGTGCGGTGTTGGAGTTGG 177 Query 3524 TGCCGAGGAAGTGCAATTCCGCGCCGTTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGA 3583 ||||||| || |||||||| || |||| ||||||||||| | || || ||| || | Sbjct 176 TGCCGAGAAAATGCAATTCAGCCGCGTTTGGCAGGATGATGGTTTCCCCGCGCAGCTCCA 117 Query 3584 CACCTACCGCATCGCGCGCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCCT 3643 || | ||| | | |||| ||||| ||| || ||||| |||||| || |||| Sbjct 116 CATCAACCTCTT---GCGCAAAGGCGGTGATGTAGTTTTTGAACTGGTGCGCCTGCGCCT 60 Query 3644 TGCTGGCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCG 3702 || ||| || | || ||||| || |||||||| ||||| ||||||||||| || ||| Sbjct 59 TGGAGGCGGAAACAAACATCTGATTACGCCCCGTGTCCAGGGCGTCGATCAGGGCTTCG 1 >seq201369 Length=218 Score = 95.1 bits (104), Expect = 3e-15 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 17283 CCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGC-CAAGGCCCGCTTGGGCGTG 17341 |||| |||||| | ||||| ||||| |||||| | ||||| ||| ||| |||||| ||| Sbjct 6 CCGAGGGCAAGAAAACCGGTATGAAAGCCTTGTTGGCCGCACAAAGCCAGCTTGG-CGTT 64 Query 17342 GTACCGCGCATCCTCGGCGTGCCGGGCCTGGATACCCAGCCGGTCGCTACCGCACTCATC 17401 || ||||| | || |||||||||| |||| | || |||| || ||| | | | Sbjct 65 AAGCCCCGCATTTTGGGGGTGCCGGGCCACGATAACGAGGCGGTTGCCTCCGAATTACTG 124 Query 17402 GCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCGGCTGCAAGACAAAG 17461 ||| | || || || ||||||||||| || || |||| ||||||||||| | Sbjct 125 GCCGTGGCGCAAAGCCTCCGCGCCTTCGCCTACCTCAGCGCCTATGGCTGCAAGAC---G 181 Query 17462 GAA---GAGGCCACCGCCTACCGCGAGAACTTC 17491 | | ||||| || ||||||| | |||||| Sbjct 182 GTATCCGAGGCGCTCGACTACCGCAAAAACTTC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113422026053544