Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq2976 114 2e-20 seq2002 114 2e-20 >seq1 Length=190651702 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| ||||||||| || | |||| | ||| ||| | | |||||||||||||| || Sbjct 33847186 TTACTTCTTATTAAATGCCTCCAGTAAACGTAGCAGGTTGAGAAACAGATTGATGATGTC 33847245 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||| | ||||| | || | | || |||||||| || | ||| || || || | Sbjct 33847246 CAGGTAAAGGTTGATTGCAGCCAGTATGTATTCTTCAGGGGATAACTTGTGCATCAGCAA 33847305 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | ||||| Sbjct 33847306 GTGAGTGTCATAAATAATAAATCCACAGAAAAGAAGTGCTCCAGCAGCAGCAATCACCAG 33847365 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||||| | ||||||| || | ||| Sbjct 33847366 CTCCATTATTTCACTATGGAAAAA 33847389 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | |||||||||||||| ||||| Sbjct 33848800 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAGCCCAAGA 33848859 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| |||| ||||||||||||| Sbjct 33848860 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACGATGGACACATCATAGAAA 33848913 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| || || || || || || || || || | || Sbjct 189202235 CACTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACCGCAATCCTCGCTGCCAAAA 189202294 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | || || || || ||| | || || ||||| || |||| Sbjct 189202295 TAGCATAGTCAGGGTGCTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCA 189202354 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || ||||| ||||| | || | || ||||| |||||||| Sbjct 189202355 GCTCCACGGTTGTGACTCCGCTGTACAGCCCCTGGATCACCTTCAT 189202400 >seq2976 Length=93210757 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 73918721 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 73918780 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 73918781 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 73918840 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 73918841 CAACCACTCTCTCACC 73918856 >seq2002 Length=109662234 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||||| ||||| |||||||| ||||||| ||| | || | Sbjct 93266413 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 93266354 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 93266353 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 93266294 Query 36300 C 36300 | Sbjct 93266293 C 93266293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656269973072240