Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq142870 122 9e-23 seq8367 118 1e-21 seq7705 100 3e-16 >seq142870 Length=314 Score = 122 bits (134), Expect = 9e-23 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 21004 GCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGCTGACACCTTTCTGG 21063 ||||| || ||||| |||||||| ||||| || || | ||| ||| | || || ||||| Sbjct 7 GCCATCAGCTGGCCGAAGTTGCCCTTGTAGGGGTCATCCCAGGCGGTCACGCCCTTCTGC 66 Query 21064 GGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCTTAAAGTCGGCACGGCCCGCG 21123 | ||| || | || || |||||||||| || | || || ||||| | |||||| Sbjct 67 GCTTTTTGCAGCGCGGCGAACGGATCGTGGATCGAGACTTTGAAGTCCTCGCGGCCCTGA 126 Query 21124 CACGAACGTTGCAACGCTTCGAAACTGCCCGGGACACTTTTGAGCGCATCGTTGATGCCT 21183 || || || ||||| || | ||||||||| || ||| || ||||||||||| Sbjct 127 CAGGAGCGCTGCAAGGCCTGGAAACTGCCTTCGATCTCTTTCAGGCTGTCGTTGATGCCA 186 Query 21184 TCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCGACAAGTTCGGTGTGGGCACT 21243 | ||| ||||| || || | || ||||||| || || | || ||| | | || | Sbjct 187 TTGCCGCCGCAGATCGGGATAAAGCCGTACAGCAGGTGGGTCAGGTTTTGCGCCGGGATC 246 Query 21244 TTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGACAAAGTA 21290 || ||||||| || | |||| || || ||||| ||||| || || Sbjct 247 TTGTCGACGGTGAAATTGCGCCCGTAAACGCCCCACTCGACGAAATA 293 >seq8367 Length=9740059 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || ||||| || || ||||| || || Sbjct 8893217 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 8893158 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | |||||| ||||| || |||||| ||||||| | |||||||||||||| Sbjct 8893157 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893098 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| |||||| || | | ||| | ||||| ||||||| || Sbjct 8893097 AATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 8893038 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| |||| || || || || || ||||| Sbjct 8893037 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8892990 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| |||| | |||| || | ||| | || || ||||| || ||||| || || Sbjct 8893676 ATAGCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 8893617 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || |||| | |||||| ||||| || |||||| ||||||| | ||||||||||| Sbjct 8893616 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGG 8893557 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 ||| |||||||||||||| ||| || || | | || | ||||| ||||||| Sbjct 8893556 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 8893497 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || | |||||||| || | ||||| || || || ||||| Sbjct 8893496 AACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 8893446 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | || |||||||| || ||||| || || || |||| | Sbjct 8893432 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 8893373 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| ||||||| | |||||||||||||| |||||||| ||| Sbjct 8893372 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 8893313 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||| || ||||||| ||| | Sbjct 8893312 TCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGTGATG 8893253 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || || || || ||||| Sbjct 8893252 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 8893218 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608 |||| || | ||| | || ||||| || || ||||| || || || |||| || | Sbjct 8892976 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 8892917 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || ||||| ||||||| | |||||||||||||| |||||||| || Sbjct 8892916 -TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTT 8892858 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| || | | ||| | ||||| ||||||| ||||| | ||| | Sbjct 8892857 GTCTTGGATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGAT 8892798 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 8892797 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8892762 >seq7705 Length=13065498 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || || |||| | Sbjct 4578406 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCA 4578347 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| ||||||| | ||||||||||| || ||||| || ||| Sbjct 4578346 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 4578287 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | || || |||| |||||||| | ||| | Sbjct 4578286 TCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATG 4578227 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || ||||| || ||||| Sbjct 4578226 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 4578192 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| | ||||| ||||| || ||| Sbjct 4578844 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 4578785 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||||||||| || ||||| || ||||| ||| || || Sbjct 4578784 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4578725 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||| || ||||| | || | |||||||| ||||| || Sbjct 4578724 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATGGTCTTGCCAGTCAAGGTC 4578665 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 4578664 TTCACAAAGATCTGCAT 4578648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494629841771200