Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2976 129 8e-25 seq2002 123 3e-23 >seq2976 Length=93210757 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 73918721 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 73918780 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 73918781 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 73918840 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 73918841 CAACCACTCTCTCACC 73918856 >seq2002 Length=109662234 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||||| ||||| |||||||| ||||||| ||| | || | Sbjct 93266413 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 93266354 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| | Sbjct 93266353 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 93266294 Query 42207 C 42207 | Sbjct 93266293 C 93266293 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | || |||||||| || || || || || ||||| ||||| ||| Sbjct 93267686 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 93267627 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || || |||||||||||||| ||||| Sbjct 93267626 TCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 93267592 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || ||| |||||||| || || || || | |||||| |||||||||||||| || ||| Sbjct 93264774 TCTTTAGAATCTTTAATGTACGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 93264715 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| ||||| || || |||||||| | || || || | || |||||| Sbjct 93264714 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGCACTTCT 93264661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669198886237360