Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq142870 118 1e-21 seq8367 107 2e-18 seq7705 82.4 8e-11 >seq142870 Length=314 Score = 118 bits (130), Expect = 1e-21 Identities = 204/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 19609 GCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCGCTGACACCTTTTTGG 19668 ||||| || ||||| |||||||| ||||| || || | ||| ||| | || || || || Sbjct 7 GCCATCAGCTGGCCGAAGTTGCCCTTGTAGGGGTCATCCCAGGCGGTCACGCCCTTCTGC 66 Query 19669 GGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTTGAAGTCGGCACGACCGGCA 19728 | ||| || | || || | |||||||| || | ||||||||||| | || || | Sbjct 67 GCTTTTTGCAGCGCGGCGAACGGATCGTGGATCGAGACTTTGAAGTCCTCGCGGCCCTGA 126 Query 19729 CACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTTGAGGGCATCATTGATGCCG 19788 || || || ||||| || | ||||||||| || ||| ||| || |||||||| Sbjct 127 CAGGAGCGCTGCAAGGCCTGGAAACTGCCTTCGATCTCTTTCAGGCTGTCGTTGATGCCA 186 Query 19789 TCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGACAAGTTCGGTGTGGGCACT 19848 | ||| ||||| || || | || ||||||| || || | || ||| | | || | Sbjct 187 TTGCCGCCGCAGATCGGGATAAAGCCGTACAGCAGGTGGGTCAGGTTTTGCGCCGGGATC 246 Query 19849 TTATCGACGG-GAAACTGTCGCGGATACACACCCCATTCGACAAAGTATGCACC 19901 || ||||||| |||| || ||| || || ||||| ||||| || || | ||| Sbjct 247 TTGTCGACGGTGAAATTG-CGCCCGTAAACGCCCCACTCGACGAAATAAGAACC 299 >seq8367 Length=9740059 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || || |||| | |||||| || || || ||| Sbjct 8893642 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 8893583 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 8893582 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTC 8893523 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| || || |||| ||| | |||||||| || | ||| Sbjct 8893522 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTT 8893463 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 8893462 TTCACAAAGATCTGCAT 8893446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | ||||| || | || | || || ||||| || |||||||| || Sbjct 8893445 GCCTCCCCTCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 8893386 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| || || || |||||| ||||||| | |||||||||||||| Sbjct 8893385 CAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893326 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | ||| | ||||| ||||||| || Sbjct 8893325 AATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAAC 8893266 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || | || || || || || ||||| Sbjct 8893265 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 8893218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| || || |||| | |||||| || || || ||| Sbjct 8893186 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 8893127 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | |||||||||||||| |||||||| ||||| ||||| || Sbjct 8893126 GCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCCTTC 8893067 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| |||| || || || | || | |||||||| |||| || Sbjct 8893066 ACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 8893007 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 8893006 TTCACAAAGATCTGCAT 8892990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || || || || |||||||| || || |||| || | ||||| || || || || Sbjct 8892958 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGCC 8892900 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| ||||||| | |||||||||||||| |||||||| ||||| ||||| || Sbjct 8892899 AGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCCTT 8892840 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | ||||| |||| || || || | || | |||||||| |||| || Sbjct 8892839 CACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 8892780 Query 143167 TTTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 8892779 CTTCACAAAGATCTGCAT 8892762 >seq7705 Length=13065498 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || || || || || |||||||| || || |||| | Sbjct 4578862 CGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCA 4578803 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || |||||| ||||||| | ||||||||||| || ||||| || ||| Sbjct 4578802 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 4578743 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||| ||||||| || || | || | Sbjct 4578742 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATG 4578683 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| ||||| || || || || || ||||| Sbjct 4578682 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4578648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505548583343520