Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq140712 113 9e-21 seq145387 111 3e-20 seq201653 105 1e-18 seq193866 89.7 1e-13 >seq140712 Length=381 Score = 113 bits (124), Expect = 9e-21 Identities = 183/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 895 TTACCGAACACCAGAAAATCCAGCACAAAGCGGCTGAAATCCTGCTGGGAAAGCCACGGG 954 || |||||||||| ||||||| || || |||||||||||||||||| || ||| | || Sbjct 57 TTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAATCCTGCTTTGACAGCAGCCGG 116 Query 955 TGCGGGATAAACGTTGAAGCCAGAATATTACGTTTGA-CGTAAATCGGTGAGCTGTGATG 1013 || || | ||| | | | || || || || | ||| |||||||| |||||||| Sbjct 117 TGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATCGT-GATCGGTGAACTGTGATG 175 Query 1014 CACGGCAGCACGCAGACTTTTTGCCAGACCGGTAAAGCTGACCGGCGGCTCATACCATCT 1073 ||| || || || | | || ||||| ||| | || || |||||||||||||| | Sbjct 176 CACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGAGATTGGCGGCTCATACCAGCG 235 Query 1074 GCCGTTACTGATGCATTCGACGTAATCCAGAATGTCACGGCGGTCGAGTACCGGCACCGG 1133 || | ||| || | |||||||| || || || || || || | ||| | ||| Sbjct 236 ATCGACGACGCAGCACTCCAGATAATCCAGTATTTCGCGCCGATCCAGCATCGGGATCGG 295 Query 1134 CTCGCCAAAGGTGAATGCCTC 1154 ||||| ||||| || ||||| Sbjct 296 GTCGCCGAAGGTAAACGCCTC 316 >seq145387 Length=359 Score = 111 bits (122), Expect = 3e-20 Identities = 225/334 (67%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 4507 CATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTCTGACCGCAGCAGCAATCC 4566 ||||||| ||||| |||||| | || ||| ||| || || || | ||| Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 4567 GATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCG 4626 | || ||||||| || |||||||| |||||||| |||||| | || || | || Sbjct 61 GCTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCA 120 Query 4627 CGTGATGAGCAAGGTCACTGACGAGGAAGGGCACACCACCTCTGAGGTCATCCGCGTGGG 4686 |||||| ||||| | |||||| || | || || || ||| | || Sbjct 121 GGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGG 180 Query 4687 TAAGGGCGGTGATTATGCCAGCCTCGATGCACTGGTGATGGATGCGACCAACAATCTGAT 4746 | | ||||| ||| || ||| ||||| |||||||||||||| ||| | ||||| Sbjct 181 CACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGAT 240 Query 4747 TGAGCCGTGGTATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTGCTGGC 4806 | | ||||||||||| ||| | || || || | |||| || ||| ||| |||| Sbjct 241 CGCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGC 300 Query 4807 GGACAAATATTTCCCCATCGTCAACAAGGAGCAG 4840 ||||||||||||||| |||||||| |||| ||| Sbjct 301 GGACAAATATTTCCCACTCGTCAACCAGGAACAG 334 >seq201653 Length=261 Score = 105 bits (116), Expect = 1e-18 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 2220 GGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAG 2279 |||||||||||| ||||| | ||||| | ||| ||| |||||||||||||||| Sbjct 240 GGGATCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCGGCCCTGTGCGGTGTTGGAG 181 Query 2280 TTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTC 2339 ||||||||||||||| || || || ||| ||| ||||| || | || ||| | Sbjct 180 TTGGTGCCGAGAAAATGCAATTCAGCCGCGT--TTG-GCAGGATGATGGTTTCCCCGCGC 124 Query 2340 AGGTCAACGTCAACCAGACGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGC 2399 || || || |||||| | ||||||||| ||||||| | |||| | ||||||| Sbjct 123 AGCTCCACATCAACCTCTTGCGCAAAGGCGGTGATGTAGTTTTTGAACTGGTGCGCCTGC 64 Query 2400 GTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGC 2446 | || ||| || | ||| ||||| ||| | || || | |||||| Sbjct 63 GCCTTGGAGGCGGAAACAAACATCTGATTACGCCCCGTGTCCAGGGC 17 >seq193866 Length=203 Score = 89.7 bits (98), Expect = 1e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1835 GCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAACAAATTCACACAT 1894 |||||| |||| || | | |||||| || || | | ||||| | || | ||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 1895 GAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCAATGTCGAACAG 1954 ||||||||| | |||||| || |||||||||| | |||| || | ||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 1955 CGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCGTCCGC 2014 ||||||||| || || || |||||| |||| ||||| || | || |||| | Sbjct 83 GTCGCAGCCGCCGCGCAACGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCTC 24 Query 2015 ACAGAGAAGACCTCCGGCAAGG 2036 ||||| | ||| ||||| ||| Sbjct 23 GCAGAGCACACCGCCGGCCAGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97938269641080