Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq145387 114 3e-21 seq140712 114 3e-21 seq201653 107 4e-19 seq193866 86.0 1e-12 >seq145387 Length=359 Score = 114 bits (126), Expect = 3e-21 Identities = 225/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 4507 ATCATGGCCGGTTTTAACGGCGTGAGGCGTGCCGAAACCTCTGACCGCAGCAGTAACCAG 4566 |||||| ||||| |||||| || || ||| ||| || || || | ||| || Sbjct 2 ATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAAG 61 Query 4567 ATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCGC 4626 || ||||||| || |||||||| |||||||| |||||| | || || | || Sbjct 62 CTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCAG 121 Query 4627 GTGATGAGCAAGGTCACTGACGAGGAAGGTCACACGACCTCTGAGGTCATCCGCGTGGGT 4686 |||||| ||||| | |||||| || | || || || ||| | || Sbjct 122 GTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGGC 181 Query 4687 AAGGGGGGTGATTATGCCAGCCTCGATGCACTGGTGATGGATGCGACCAACAACCTGATT 4746 | | ||||| ||| || ||| ||||| |||||||||||||| ||| | ||||| Sbjct 182 ACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGATC 241 Query 4747 GAGCCGTGGTATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTGCTGGCG 4806 | | ||||||||||| ||| | || || || | |||| || ||| ||| ||||| Sbjct 242 GCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGCG 301 Query 4807 GACAAATATTTCCCCATCGTCAACAGGGAGCAG 4839 |||||||||||||| |||||||| ||| ||| Sbjct 302 GACAAATATTTCCCACTCGTCAACCAGGAACAG 334 >seq140712 Length=381 Score = 114 bits (126), Expect = 3e-21 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 873 TAACGCTTTTCCAGAAACGCATTACCGAACACCAGAAAATCCAGCACAAAGCGGCTGAAA 932 |||||| |||| ||| || |||||||||| ||||||| || || ||||||||||| Sbjct 36 TAACGCGACTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAA 95 Query 933 TCCTGCTGGGACAGCCACGGATGCGGGATAAATGTCGAGGCCAGAATATTGCGTTTGA-C 991 ||||||| |||||| | | || || | || | | | || ||||| || | | Sbjct 96 TCCTGCTTTGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATC 155 Query 992 GTAAATCGGGGAGCTGTGATGCACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCT 1051 || ||||| || ||||||||||| || || || | | || ||||| ||| | || Sbjct 156 GT-GATCGGTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGA 214 Query 1052 GATTGGTGGCTCATACCATCTGCCGTTACTGATGCATTCGACGTAATCCAGAATGTCACG 1111 |||||| ||||||||||| | || | ||| || | |||||||| || || || Sbjct 215 GATTGGCGGCTCATACCAGCGATCGACGACGCAGCACTCCAGATAATCCAGTATTTCGCG 274 Query 1112 GCGGTCGAGTACCGGCACCGGTTCGCCAAAGGTGAATGCCTC 1153 || || || | ||| | ||| ||||| ||||| || ||||| Sbjct 275 CCGATCCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTC 316 >seq201653 Length=261 Score = 107 bits (118), Expect = 4e-19 Identities = 162/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 2219 GGGATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAG 2278 |||||||||||| ||||| | ||||| | ||| ||| |||||||||||||||| Sbjct 240 GGGATCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCGGCCCTGTGCGGTGTTGGAG 181 Query 2279 TTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTC 2338 ||||||||||||||| || || || ||| ||| ||||| || | || ||| | Sbjct 180 TTGGTGCCGAGAAAATGCAATTCAGCCGCGT--TTG-GCAGGATGATGGTTTCCCCGCGC 124 Query 2339 AGGTCAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGC 2398 || || || |||||| | ||||||||| ||||||| | |||| | ||||||| Sbjct 123 AGCTCCACATCAACCTCTTGCGCAAAGGCGGTGATGTAGTTTTTGAACTGGTGCGCCTGC 64 Query 2399 GTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 2446 | || ||| || | ||| ||||| ||| | || || | ||||||| Sbjct 63 GCCTTGGAGGCGGAAACAAACATCTGATTACGCCCCGTGTCCAGGGCG 16 >seq193866 Length=203 Score = 86.0 bits (94), Expect = 1e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1834 GCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTCAACAAATTCACACAT 1893 |||||| |||| || | | |||||| || |||| | ||||| | || | ||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 1894 GAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAACAA 1953 ||||||||| | |||||| || |||||||||| | |||| || | ||| |||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 1954 TGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCGTCCGC 2013 |||||| || || || || |||||| |||| ||||| || | || |||| | Sbjct 83 GTCGCAGCCGCCGCGCAACGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCTC 24 Query 2014 ACAGAGAAGACCTCCGGCAAGG 2035 ||||| | ||| ||||| ||| Sbjct 23 GCAGAGCACACCGCCGGCCAGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104180278615272