Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2002 181 2e-40 seq8367 176 1e-38 seq7705 149 1e-30 seq2976 116 8e-21 seq9582 84.2 5e-11 >seq2002 Length=109662234 Score = 181 bits (200), Expect = 2e-40 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||| ||||| | ||||||||| Sbjct 78263434 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTCGATACAGTGTTCTTCATC 78263493 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || |||||||||| || |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 78263494 CTGAGAAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 78263553 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 78263554 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 78263596 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || |||||||| || |||||||| Sbjct 93266278 GGAGAACGTGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 93266337 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| |||||||||||||| | ||||| ||| | ||||| |||||||| | Sbjct 93266338 TCAATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAACGAGCTC 93266397 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 93266398 ATCAGTAGAGATGA 93266411 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || ||| |||| | || ||||||||||| | ||| Sbjct 78265314 GGACA-GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTTATTATGTACATGTAT 78265372 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 ||||| | ||||| || ||||||| | ||| || ||| |||||||||| |||| | Sbjct 78265373 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGATACTTG 78265432 Query 78764 ACTATAATGCAATTG 78778 |||||| |||||||| Sbjct 78265433 ACTATATTGCAATTG 78265447 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || | Sbjct 93264639 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCTCGTTGTTTCTATGGCT 93264698 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 93264699 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACGTACA 93264758 Query 269016 T 269016 | Sbjct 93264759 T 93264759 >seq8367 Length=9740059 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | || || || || | || ||||||||||| || || |||||||| Sbjct 8893672 CCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 8893613 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | |||||||| || || || |||||||| || |||||||| ||||| ||||| Sbjct 8893612 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 8893553 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || ||||| || || ||||| || | ||| || || || || ||| Sbjct 8893552 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 8893493 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 8893492 TCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 8893446 >seq7705 Length=13065498 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 4578649 ATCCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4578590 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || |||||||| || ||||| || |||||||| Sbjct 4578589 GACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGG 4578530 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||| || ||||| || Sbjct 4578529 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCG 4578470 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || |||||||| || | || || ||||| |||||||| Sbjct 4578469 ACCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 4578420 >seq2976 Length=93210757 Score = 116 bits (128), Expect = 8e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 73918844 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGG 73918785 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 73918784 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATCAGCAGAGAT 73918725 Query 269258 GA 269259 || Sbjct 73918724 GA 73918723 >seq9582 Length=68461266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 180/267 (67%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 174074 AGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAACT 174133 ||| |||| || | || ||||||||||| | ||| |||||| | ||||| |||||| | Sbjct 53223036 AGTGAATACTCCACGCGGATTATACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAATT 53222977 Query 174134 TTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGCG 174191 |||||| ||| |||||| |||| | || |||| || || | | ||||||| Sbjct 53222976 TTCAGCACTTTCCCATTCCAGGTTTCTGTCTTGCCAGATGATAAAGAT--TCTCCACGCA 53222919 Query 174192 ATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATTT 174251 || || ||| | | | |||| ||| || |||| | | |||||||| |||| ||| Sbjct 53222918 GGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTTCCCTTGGCATAAAATGCCTGTGTTT 53222859 Query 174252 GGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACTA 174311 |||| || | || |||| || |||| || || || ||||| || |||| | Sbjct 53222858 GGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAAAGA 53222799 Query 174312 TCCTAACGTATTCACCAGGTACATAAC 174338 || || ||||||| | ||| ||| Sbjct 53222798 TCTGAATTGATTCACCTGAAACAAAAC 53222772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147986401392488