Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq145387 152 1e-32 seq140712 131 3e-26 seq193866 109 1e-19 seq33731 91.5 3e-14 seq139306 89.7 1e-13 >seq145387 Length=359 Score = 152 bits (168), Expect = 1e-32 Identities = 247/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 5254 CATTATGGCCGGTTTTAACGGTACCACCCGCGCTGACACCTCGGACCGCACCAAAAATAC 5313 ||| ||| ||||| ||||| |||| |||||| || ||||| |||| || | Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 5314 GCTGCTGCAGGATGTGGCTGTAGGCTGGCTGCA-AAAGTACCGCAATGAAGCCCCGGCGC 5372 |||| ||||||| || | |||||| |||| ||||| |||||| | || || | || Sbjct 61 GCTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGT-CCGCAAGGGTGCGCCAGAGC 119 Query 5373 GCGTGATGAGCAACATCACCGACGCGGACGGTAAGGTCGTTTCGGCAGTGATTCGCGTCG 5432 |||||| || | | || |||||| | || || |||| | |||||| ||| Sbjct 120 AGGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCG 179 Query 5433 GTAAAAATGGTGACTATGAGAACATCGATGCACTGGTGATGGATGCCACCAACAACCTGA 5492 | | ||||||||||| | ||| | ||||| ||||||||||||||| ||| | |||| Sbjct 180 GCACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGA 239 Query 5493 TTGACGAGGTTTATCAGGATGAC-CCGAACCTCGTCGCCATTGTTGGTCGTAAGCTGCTG 5551 | | || |||||||||||| ||||| || |||||| ||||||||||| ||| || Sbjct 240 TCGCCGCTTGGTATCAGGATGACACCGAA-CTGGTCGCCGTTGTTGGTCGTTCCCTGTTG 298 Query 5552 GCTGACAAATATTTTCCTCTGGTGAACAAACAGCAGGAGAACAGCGAGTC 5601 || ||||||||||| || || || ||| | | ||| || | |||||| Sbjct 299 GCGGACAAATATTTCCCACTCGTCAACCAGGAACAGCCAAATACCGAGTC 348 >seq140712 Length=381 Score = 131 bits (144), Expect = 3e-26 Identities = 205/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 888 CTCAAGAAAGGCGTTACCGAATACCAGATAGTCGAGCGCAAAGCGGCTGAAATCCTGACG 947 ||| | |||| ||| ||||| |||| | | || ||||| |||||||||||||||| Sbjct 44 CTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAATCCTGCTT 103 Query 948 GGACAGCAGTGGGTGCGGAATGTAGGTGCTCGCGAGCACGTTGCG-TTTAACGTAAATCG 1006 |||||||| |||| || || | ||||| | | | |||||| || | ||| |||| Sbjct 104 TGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATCGT-GATCG 162 Query 1007 GTGAGCTGTGATGCACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGCG 1066 |||| ||||||||||| || | ||| | | || ||||| ||| ||| || |||| Sbjct 163 GTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGAGATTGGCG 222 Query 1067 GCTCGTACCA---TTTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCGCGCTTAT 1123 |||| ||||| | | || || | |||||| | |||||||| || |||||| || Sbjct 223 GCTCATACCAGCGATCGACG--AC-GCAGCACTCCAGATAATCCAGTATTTCGCGCCGAT 279 Query 1124 CGAGTACCGGCACCGGCTCACCGAAGGTGAACGCCTCCATTTTTTGCG 1171 | || | ||| | ||| || |||||||| |||||||| | | ||||| Sbjct 280 CCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTCGACGTGTTGCG 327 >seq193866 Length=203 Score = 109 bits (120), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 2572 GCAGCGCTGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGTCGACAAACTCGCACAT 2631 ||||||||||| || | | |||||| || || | ||||||||| || | |||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 2632 AAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAG 2691 |||||||| | ||| || ||||| |||||||| || |||| ||||||||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 2692 GGTGCAGCCACCG-GCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAG 2750 | |||||| ||| |||| || || ||||| |||| ||||| || | || ||| Sbjct 83 GTCGCAGCCGCCGCGCAA-CGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCT 25 Query 2751 CGCAAAGAAGCCCACCGGCGAG 2772 |||| || | || ||||| || Sbjct 24 CGCAGAGCACACCGCCGGCCAG 3 >seq33731 Length=845 Score = 91.5 bits (100), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 12403 ATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTGAGCTTGGCCTTTATGACGATGAAG-- 12460 || |||||| || | |||||||||||| |||||||||| | ||||| | |||||| | Sbjct 322 ATGCCGCCGCAGATCGGCGGCTTCTGGCTGCGTGAGCTGGCGCTTTACGCCGATGATGGC 381 Query 12461 GGACGCTGATTGCTGTCGCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCT 12520 | | || || || |||| ||| ||| | |||| |||||||||| ||||| || || | Sbjct 382 GAATGC--ATCGCCGTCGGCAACATGCCGGAAACCTACAAGCCATTGCTGGCAGAAGGTT 439 Query 12521 CGGGGCGT 12528 |||||||| Sbjct 440 CGGGGCGT 447 >seq139306 Length=319 Score = 89.7 bits (98), Expect = 1e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10870 TGAGTCTGAGCCAATTGTTAAATTGCTGCAGGAAAACGCCTACCGTGAGGTTATCTGGCG 10929 |||||| ||||| || || ||| | ||||| ||| ||||||||||||||| | | || Sbjct 251 TGAGTCCGAGCCGATCGTCAAAGTCCTGCAAGAATCCGCCTACCGTGAGGTGTTGTTACG 192 Query 10930 TCAGCGTGTCAATGAAGCTGCACGCGCAGTGATGCTGGCTTATGCCATAGACAGTGACCT 10989 ||||| |||||||| || || | || || ||| |||| || ||||| ||| ||||| Sbjct 191 CCAGCGCGTCAATGAGGCAGCGCAGGCCGTAATGGTGGCCTACGCCATGAGCAGCGACCT 132 Query 10990 CGAT 10993 |||| Sbjct 131 CGAT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97644678216936