Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq6691 141 1e-28 seq8060 134 2e-26 >seq6691 Length=29209805 Score = 141 bits (156), Expect = 1e-28 Identities = 224/317 (71%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 577564 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 577623 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || |||||||| || ||||| || | |||| Sbjct 577624 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAATACTCAGGGG 577683 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| || || ||||| || || | || | || Sbjct 577684 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 577743 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || | |||||||| || ||||| || | |||| ||| Sbjct 577744 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 577802 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 577803 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 577862 Query 8977 TTTATTAATAAAAATAA 8993 |||||||| | || || Sbjct 577863 ATTATTAATGATAAGAA 577879 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || |||||||| || || || ||| ||| |||||||| || |||||| Sbjct 579570 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 579629 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || ||||| |||||||| || ||||| || || || |||||||| || || || Sbjct 579630 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 579689 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 579690 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 579749 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || ||||| ||| Sbjct 579750 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 579809 Query 9862 TG 9863 || Sbjct 579810 TG 579811 >seq8060 Length=10292962 Score = 134 bits (148), Expect = 2e-26 Identities = 191/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || ||||| || | |||||||| || |||||| || || || || | Sbjct 8604092 GGCACACGGAATGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGT 8604033 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| ||||||||||| | || || ||||||| ||||| ||||| |||||||| Sbjct 8604032 GATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCGCCAAAGGTACTGGGCTTCCAGTAC 8603973 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| ||| | | || || || || ||||| |||||||| | ||| Sbjct 8603972 TCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCCCCAATCTCC 8603913 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || || |||||| ||||||| |||| || || | || ||||| | || Sbjct 8603912 ACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAA 8603853 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| || |||||||| || || Sbjct 8603852 AACTCCAGAGCATCAATGTCTCCATACAG 8603824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706476401663840