Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq142870 129 5e-25 seq8367 95.1 1e-14 >seq142870 Length=314 Score = 129 bits (142), Expect = 5e-25 Identities = 203/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 55833 TATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCA-CTCC 55891 ||||| ||||||||||| ||||| | || || | ||| | || |||| | | Sbjct 293 TATTTCGTCGAGTGGGGCGTTTACGGGCGCAATTTCACCGTCGA-CAAGATCCCGGCGCA 235 Query 55892 TAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAACGA 55951 || ||| | ||| | || ||||| || || ||||| ||||||||| | ||||| ||||| Sbjct 234 AAACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACGA 175 Query 55952 CAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGAGA 56011 ||| || || ||| || ||||| | || | ||||| || ||| ||| || || Sbjct 174 CAGCCTGAAAGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCTGTCAGGGCCGCGA 115 Query 56012 CGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAAGT 56071 ||||||||||| ||||| || || |||| || ||| | ||||| | || || || Sbjct 114 GGACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGGGCGT 55 Query 56072 GACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGC 56119 |||||| ||| | || || ||||| |||||||| || || ||||||| Sbjct 54 GACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATGGC 7 >seq8367 Length=9740059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || || | || || ||| ||| Sbjct 8893446 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 8893505 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| |||||||||||||| ||||||||||| Sbjct 8893506 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 8893565 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||| | | | | | || || ||| Sbjct 8893566 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 8893625 Query 24171 ATTCAAAAAGAATCTAC 24187 || || |||||||| || Sbjct 8893626 ATCCAGAAAGAATCCAC 8893642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 23960 AAATTATATAAGTACTTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGG 24019 || || |||| || |||| || ||||| |||| | ||||| || || | ||||| Sbjct 8892736 AATTTCTATATGT--TTTTCAGGTAAACA---TGCAGATCTTTGTGAAGACCCTGACTGG 8892790 Query 24020 AAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGAT 24079 || | || ||| |||| || ||| ||| |||||||| || | || || || || Sbjct 8892791 CAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATTGAAAATGTGAAGGCCAAAAT 8892850 Query 24080 TACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACT 24139 ||||| |||||||| ||||||||||| ||||| ||||| | || |||||||| || Sbjct 8892851 CCAAGACAAGGAAGGCATTCCTCCCGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCT 8892910 Query 24140 CGAAGATG 24147 ||||||| Sbjct 8892911 GGAAGATG 8892918 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || ||| |||| || ||| ||| Sbjct 8892990 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 8893049 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || || || ||||| |||||||| ||||||||||| Sbjct 8893050 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 8893109 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| ||||| | | |||||||| || ||||| Sbjct 8893110 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 8893144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428724097209330