Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2976 114 2e-20 seq2002 114 2e-20 seq1 86.0 8e-12 >seq2976 Length=93210757 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 73918721 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 73918780 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 73918781 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 73918840 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 73918841 CAACCACTCTCTCACC 73918856 >seq2002 Length=109662234 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||||| ||||| |||||||| ||||||| ||| | || | Sbjct 93266413 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 93266354 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 93266353 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 93266294 Query 32803 C 32803 | Sbjct 93266293 C 93266293 >seq1 Length=190651702 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || ||||| || |||| || |||||| || ||||| || || || | || || | Sbjct 189190953 CATACGTTTCGTACGGCCCTTGCTGCTCAGCCAGCTCACAGCTGGCTTCCAGAGCCCCAT 189191012 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||||||||| || ||||||| || || || ||||| || | || ||||| || Sbjct 189191013 AATAAATGGTCTCAAAGATCTGCTGGTTCAGGCGCTGCGCCTCGGGACTTTCAAAGGGGA 189191072 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 | | | || || || ||||| || | || || |||||||| ||||| || Sbjct 189191073 ACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACACCAATGCCGATGGG 189191124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631800122365600