Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq30879 248 2e-60 seq7705 179 7e-40 seq8367 167 4e-36 seq138072 156 8e-33 seq9499 100 5e-16 >seq30879 Length=12587 Score = 248 bits (274), Expect = 2e-60 Identities = 395/561 (70%), Gaps = 12/561 (2%) Strand=Plus/Plus Query 268195 GACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCAT 268254 ||| || | ||| | || || |||||||||||||| || | || ||| ||||| Sbjct 10912 GACCGAGTGCTGTTCACCCGTAGCAATCACAAAGTCTTCCGCCTTGTCCTGCTGTAGCAT 10971 Query 268255 TTTCCACATTGCTTCG--ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATG 268312 |||| ||| || |||||||| ||||| || ||||| ||||| || | ||| Sbjct 10972 CAGCCAC--TGCATCTCAACATAGTCACGCGCGTGACCCCAGTCGCGAAGCGCATTCATA 11029 Query 268313 TTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATT 268372 || || || | ||||||| ||| || ||||| | || || ||| | || || || Sbjct 11030 TTTCCAAGATAAAGGCATTCTTGCAGTCCAAGCTTGATACGCGCCAGAGCACGCGTAATC 11089 Query 268373 TTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTG 268432 ||||| |||||||| || || || || | || ||| || ||||| || || |||||| Sbjct 11090 TTTCGAGTCACGAATGTTTCACCGCGAATCGGAGACTCATGATTGAAAAGAATTCCGTTG 11149 Query 268433 CACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCG---TCCAGTATGCAAACATC 268489 |||||| |||||||||| || || | |||||| ||||| ||||||| ||| ||||| Sbjct 11150 CACGCGTACATGCCATAGGCTTCCCTGTAGTT---GACCGTGATCCAGTAAGCATACATC 11206 Query 268490 TTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCT 268549 || || || || || || ||||| || | ||| ||||| || |||||||| |||||| Sbjct 11207 TTAGCCACGGCATAGGGTGAACGCGGGTAGAAAGGCGTTGTTTCTTTTTGAGGTATTTCT 11266 Query 268550 CGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGT-TTTTTCGAG 268608 | || ||| |||||||||| |||||||| || || || |||||||| | |||| | Sbjct 11267 TGAACCAGGCCGTAGAGCTCGGATGTCGATGCCTGATAAAATTTTGTTGTATCTTTCAAA 11326 Query 268609 ACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGT 268668 ||||| || || ||||| || || | ||||| || || | ||||| | || || Sbjct 11327 CCCGCA-ATACGAATTGCTTCCAGAATTCGAAGTGTACCTAATGCATCCGAATTGGCCGT 11385 Query 268669 ATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTC 268728 ||| |||||| || || || ||| || || || || || | || ||||| || || Sbjct 11386 ATATTCCGGCTCTTCAAAAGAAACCGCCACGTGACTTTGAGCAGCAAGATTATAGACTTC 11445 Query 268729 ATCCGGTTTGACCTGCTGCAC 268749 ||| || ||||| | |||||| Sbjct 11446 ATCGGGCTTGACTTCCTGCAC 11466 >seq7705 Length=13065498 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || |||||||| || |||||||| || || || Sbjct 4578418 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4578359 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || || || || || || || || ||||| ||| Sbjct 4578358 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 4578299 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||| || | ||| || Sbjct 4578298 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACC 4578239 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || | |||||| ||||| |||||||| Sbjct 4578238 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 4578192 >seq8367 Length=9740059 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | |||||||| |||| ||| || ||||||||||| |||||||| || || || Sbjct 8893444 CCTCCCCTCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 8893385 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || || || || || || ||||| ||| Sbjct 8893384 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 8893325 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || || || ||||| | ||| || Sbjct 8893324 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACC 8893265 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| || || |||||||| Sbjct 8893264 TCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 8893218 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| |||| ||| || |||||||| || |||||||| || || || Sbjct 8892988 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 8892929 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || || || || ||||| ||| Sbjct 8892928 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGA 8892869 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| || || ||||| || || |||||||| | || || Sbjct 8892868 ATGCCTTCCTTGTCTTGGATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 8892809 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| || || |||||||| Sbjct 8892808 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8892762 Score = 159 bits (176), Expect = 6e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || || || || || | | Sbjct 8893207 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8893148 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || ||||| |||||||||||| Sbjct 8893147 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCC 8893088 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| || || ||||| ||| || |||||||| | || || || | |||| Sbjct 8893087 TTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTG 8893028 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| || || |||||||| Sbjct 8893027 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8892990 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||| ||||| |||||||| || || || || || | | Sbjct 8893663 AGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 8893604 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| || || || || || || || || ||||| ||||||||||| Sbjct 8893603 CCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCT 8893544 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| ||||| || ||| |||||||| | || || || | ||| Sbjct 8893543 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTG 8893484 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || || |||||||| Sbjct 8893483 ATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 8893446 >seq138072 Length=515 Score = 156 bits (172), Expect = 8e-33 Identities = 158/203 (78%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 268267 TTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAG 268326 |||||| ||||| |||||||||||||| |||||| || | ||| || ||| |||| Sbjct 313 TTCGACGTAGTCGCGCGCATGGCCCCAGTCGCGCAGCGCCGAAAGGTTGCCCAGGTACAG 372 Query 268327 GCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAA 268386 ||||| |||| ||| ||| | ||| || || ||||| ||||| || || |||||||| Sbjct 373 GCATTCCTGCAGGCCCAGCACGATGCGGGCCAGGCCGCGGGTGATCTTGCGCGTCACGAA 432 Query 268387 CGTCTCGCCACG-TAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGC 268445 |||||||| || | | | | | ||||||||||| ||||| |||||||| || |||||| Sbjct 433 GGTCTCGCCGCGCTTGGGCGAT-TCGTGGTTGAACAGGATCCCGTTGCAGGCATACATGC 491 Query 268446 CATATGCCTCACGGTAGTTCACG 268468 | || ||||| |||||||||||| Sbjct 492 CGTAGGCCTCGCGGTAGTTCACG 514 >seq9499 Length=4611874 Score = 100 bits (110), Expect = 5e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| ||||||||| |||||| || || | ||| || ||| Sbjct 3525358 CCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATAGTATCATTGGGTTCCACCTCC 3525417 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||||||||| ||||| || ||||| || || ||||||||| || Sbjct 3525418 AAGGTGATGGTTTTGCCCGTCAGCGTCTTCACAAAGATCTGCATTTTG 3525465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918957920519920