Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq33712 199 1e-46 seq194231 152 1e-32 seq55791 136 1e-27 seq200661 111 4e-20 seq201839 91.5 4e-14 >seq33712 Length=1189 Score = 199 bits (220), Expect = 1e-46 Identities = 235/315 (75%), Gaps = 5/315 (2%) Strand=Plus/Minus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 ||| |||| |||||||| ||| ||||| | | | | ||||| | || || ||| || Sbjct 382 TGGCTGGGCGGCAAGCGTCGCTTGGCTGATCGCCTTCTGCCGTACTTTCCGCCTCACCAG 323 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAAG---ATGCCGACC 21145 ||||| || || |||||| || | ||| ||| |||| ||| || | |||||| || Sbjct 322 TGCTACGTCGAACCGTTCGCAGGCGGCGCAGCCATGTTCTTTCTGCGGCCTATGCCGGCC 263 Query 21146 AAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCAG 21205 | || || || |||||||||| ||| | || ||| | ||||| || || |||||| || Sbjct 262 GACGTCGAGGTTCTCAACGACGTCAACGGAGAACTGATCAACCTCTATCGGGTGGTGAAG 203 Query 21206 CATCACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGTTC 21265 |||||||| ||||| ||||| |||||||||||||||||||| ||||| || ||||| Sbjct 202 CATCACCTGGAGGAATTCGTACGCCAGTTCAAATGGGCGCTGTCGAGCCGACAGGTGTTC 143 Query 21266 AAGTGGCTGGACGAT-ACGCCCGTCGAGACCCTGACCGATATTCAGCGTGCTGCCCGGTT 21324 || ||||| | ||| || || | |||||||||||||| || ||||| || ||| |||| Sbjct 142 AAATGGCTCCA-GATCACACCTGAGGAGACCCTGACCGACATCCAGCGGGCCGCCAGGTT 84 Query 21325 CTATTACCTGCAGCA 21339 || || || ||||| Sbjct 83 CTTCTATCTACAGCA 69 >seq194231 Length=202 Score = 152 bits (168), Expect = 1e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 21210 ACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGTTCAAGT 21269 |||| ||||| ||||||||||||||||| |||||||| | |||||| |||||||||||| Sbjct 1 ACCTGGAGGAATTCGTCCGCCAGTTCAAGTGGGCGCTGACCAGCCGGCAGATGTTCAAGT 60 Query 21270 GGCTGGACGATACGCCCGTCGAGACCCTGACCGATATTCAGCGTGCTGCCCGGTTCTATT 21329 ||| | | || |||| |||||| ||||| ||||||||||| || ||||| ||||| | Sbjct 61 GGCAGAAAGAAACGCGGCCCGAGACGCTGACTGATATTCAGCGGGCGGCCCGCTTCTACT 120 Query 21330 ACCTGCAGCAGATGGGCTTCGGCGCCAAGATTACCGGCCGCACCTTTGGCACGGCCACCA 21389 ||||| ||||| ||||| ||| |||| | || | || || ||||| || || | Sbjct 121 ACCTGATGCAGAACTGCTTCAGCGGCAAGCTGGAGGGTCAGACGTTCGGCACCGCAACGA 180 Query 21390 CTACGCCGCCAAAACTGAACCT 21411 | ||||||| |||||||| Sbjct 181 CGGCGCCGCCGGGGCTGAACCT 202 >seq55791 Length=415 Score = 136 bits (150), Expect = 1e-27 Identities = 239/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 21377 GGCACGGCCACCACTACGCCGCCAAAACTGAACCTGCTGCGCCTCGAGGAGACGCTAAGC 21436 ||||| || || || ||||||| ||||||||||| || || || || ||| | | Sbjct 414 GGCACCGCAACGACGGCGCCGCCGGGGCTGAACCTGCTCCGGCTGGAAGAAACGTTGTCC 355 Query 21437 CAGGCGCACCTACGCCTGAGCCGTGTTTACGTTGAGCACCTGGACTGGCAGGCGTGCATG 21496 || ||||| |||||| ||| | ||||| ||||| ||| ||||| || ||| || Sbjct 354 GCAGCCCACCTTCGCCTGGCGCGTATCTACGTGGAGCATCTGCCCTGGCTGGATTGCGTG 295 Query 21497 GAAAAGTACGACCGACCGCACACCCTGTTTTACCTCGACCCGCCGTACTGGCAGACCGAG 21556 | |||||| | |||||||| || || ||| | |||||||| |||||| | || | Sbjct 294 AAGCGCTACGACAGGCCGCACACGCTCTTCTACATGGACCCGCCCTACTGGGACACGGCC 235 Query 21557 GGCTACGGTGTCGACTTCCCCTTCGAGCAATATGAGCGCATGGCTGA---GATGGCCAGG 21613 |||||||| || || ||| | ||||||| || | | |||||||| ||| || Sbjct 234 GGCTACGGAGTGGAATTCGGCATCGAGCAGTACGCGGCGATGGCTGATTCCATG---CGG 178 Query 21614 ACGGTGAAGGGTAAGGTGGTGATCAGCATCAACGACCACCCGGATATCCGAAAGGCGTTC 21673 || |||| ||| | | || ||||| |||| ||||| ||| | || || | || ||| Sbjct 177 TCGATGAAAGGTCGCGCGCTGGTCAGCGTCAATGACCATCCGAAGATGCGCGAAGCCTTC 118 Query 21674 GCCGGCTTCCGGATGCAGGAAGTTAGCCTGCGCCATACCGTTGGCGG 21720 |||||||| ||||||| | | | ||| | ||||| ||||| Sbjct 117 GCCGGCTTTTCCATGCAGGTGCTGGACATCCGCTACACCGTCGGCGG 71 >seq200661 Length=255 Score = 111 bits (122), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 ||| |||||||||||||||||||||| | | || || || || || |||| Sbjct 51 TGGCTGGGTGGCAAGCGCCGCCTGGCCGACAAGATTCTTCCCCTTTTTCCCAAGCATTCC 110 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTT---ATGAAGATGCCGACC 21145 ||||| || ||||| ||| || | || || || |||| | | | |||| || Sbjct 111 TGCTACGTCGAGCCATTCGCGGGCGGGGCGGCATTGCTTTTCGCCAGGTCGGAGCCGGCC 170 Query 21146 AAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCAG 21205 ||||| || || | |||||| | ||| |||||||||| ||||||||||| || ||||| Sbjct 171 AAGGTGGAGGTGCTGAACGACATCAACGGCGACCTGGTCAACCTGTACCGGGTAGTGCAA 230 Query 21206 CATCACCTCGAGGAGTTCGTCCGCC 21230 || ||||| ||||| |||||||||| Sbjct 231 CACCACCTGGAGGAATTCGTCCGCC 255 >seq201839 Length=207 Score = 91.5 bits (100), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 ||| | || ||||||||||||||||| | | | || || | |||||| ||| || Sbjct 39 TGGCTCGGCGGCAAGCGCCGCCTGGCCGACCGTCTGCTTCCGTATTTCCCACCCCACCAG 98 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAAG---ATGCCGACC 21145 |||||||| ||||||||| || | || ||| |||| || || | ||| || || Sbjct 99 TGCTATGTCGAGCCGTTCGCCGGCGGGGCGGCCATGTTCTTCCTGCGGCCCATGGCGGCC 158 Query 21146 AAGGTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACC 21194 | |||||||| |||||||||| || |||| ||| | |||||||||| Sbjct 159 GACGTTGAAGTACTCAACGACGTCAATGGCGAGCTGATAAACCTGTACC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121773425585988