Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq193866 113 1e-20 seq139306 89.7 1e-13 seq23847 82.4 2e-11 seq49436 80.6 7e-11 >seq193866 Length=203 Score = 113 bits (124), Expect = 1e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 4635 CGGAAACACCGACGCGTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAG 4694 ||| || || |||| | ||||||||||| |||||||| ||||||| | ||||| Sbjct 182 CGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACATGAACAGGTTGTCAAAATCTTC 123 Query 4695 TTCGCTGTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGC 4754 ||||||| ||| ||||||| ||||||||| ||||||| |||||||||||| | ||| Sbjct 122 ATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAGGTCGCAGCCGCCGCGCAACGC 63 Query 4755 ATCCTCCACCGTCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCG 4809 ||| || | | ||||| ||||| | || |||| ||||| ||| ||| || Sbjct 62 ATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCTCGCAGAGCACACCGCCG 8 >seq139306 Length=319 Score = 89.7 bits (98), Expect = 1e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 14460 CTGCACCCCGCCGACCAGCGGGACGCCGCGCGCGCCACGCTGGCGCTG-GAATCCGAGCC 14518 ||| |||| | || | ||||| || | |||| |||||||| ||| || |||||||| Sbjct 298 CTGTACCCGGAGGAAGAACGGGAAGCAGTGCGCCGCACGCTGG-GCTATGAGTCCGAGCC 240 Query 14519 GATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGAA 14578 |||| ||| || |||| || ||||||||| ||| || ||| ||||||||||| || Sbjct 239 GATCGTCAAAGTCCTGCAAGAATCCGCCTACCGTGAGGTGTTGTTACGCCAGCGCGTCAA 180 Query 14579 CGACGCGGCGCGTGGGGTCATGCTGGCCTTCGCCGAAGGGGA-AGACCTGGAGCAGATTG 14637 || || |||| | || ||| |||||| |||| | | | | ||||| || ||| | | Sbjct 179 TGAGGCAGCGCAGGCCGTAATGGTGGCCTACGCC-ATGAGCAGCGACCTCGATCAGTTGG 121 Query 14638 CGGCGAACTTCAACGTG 14654 | || ||| | ||||| Sbjct 120 CCGCCAACAACGACGTG 104 >seq23847 Length=8263 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 36571 GGGCCGGCATCCGTGACTTCCGCTGGCACGATCTGCGCCACACCTGGGCGAGCTGGCACG 36630 |||| || || ||| ||||||| ||||||||||| || || |||||||| ||| | Sbjct 7186 GGGCGGGAATAACTGATTTCCGCTTTCACGATCTGCGGCATACGTGGGCGAGTTGGTTGG 7245 Query 36631 TGCAGCGCGGCACGCCGCTACAGGTGCTCAAGGAACTGGGCGGGTGGGAAACCATGGAGA 36690 | ||| ||| ||| || || || | ||| ||||||| ||||| | ||| || | Sbjct 7246 TTCAGGCAGGCGTGCCACTTTCGGCACTGCAAGAAATGGGCGGATGGGAGAGCATAGAAA 7305 Query 36691 TGGTGCAACGGTATGCTCACCTGTC 36715 |||| || || ||||||||||| || Sbjct 7306 TGGTTCAGCGCTATGCTCACCTATC 7330 >seq49436 Length=832 Score = 80.6 bits (88), Expect = 7e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 7124 CAGACCAACTCGGACACGCACATCACCTACCAGAAGCTGGACGCTTGGGCGAAGTTCGCC 7183 |||||||||| |||||| | | | || ||||||||||| |||| || ||| Sbjct 694 CAGACCAACTTTGACACGGCCCTGAAATATTCCAAGCTGGACGCCTGGGGTAAATTCAAA 753 Query 7184 GACTTCCAGACTCGCATCCGCGACGCCATCATCAAGCGCCAGGCGCTGGACCGCATCATG 7243 |||||||||| || || ||| || ||| | || ||||||| || |||||||||||| Sbjct 754 GACTTCCAGATCCGTATTCGCAACCAGATCGTGAAACGCCAGGGCCTCGACCGCATCATG 813 Query 7244 ATCGGCTTCAACGG 7257 ||||| | ||||| Sbjct 814 ATCGGTTGGAACGG 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123570077453304