Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq38063 113 1e-20 seq142977 91.5 3e-14 seq139399 82.4 2e-11 >seq38063 Length=1017 Score = 113 bits (124), Expect = 1e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14539 AACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTGCAGCCCTTCGGCTGG 14598 ||||||||||| ||||||||||||||| | | || ||| | | ||| || |||||| Sbjct 766 AACGAGCTGCGCCTGCGCGACAACAGCGCCGATGGAGAATCGCTCTGGCCGTTTGGCTGG 825 Query 14599 ATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGCGGCCTGTTTCGCGTG 14658 ||||| ||| || || ||||| |||||| | ||||||| || |||||||| || Sbjct 826 ATCATGCACACGCACCGCTCGCGCAGCGGCTACATCGCCCGCACGGGTCTGTTTCGGGTA 885 Query 14659 CTGGCCTGGCCGTACCTGTTTCGCCACTACGCCACCTCCGACCTGGCGGAAATGCTGGAA 14718 || |||||||||| || || ||| ||| ||||||||| || | ||||| Sbjct 886 CTCGCCTGGCCGTGGCTCTTCAAGAACTTTGCCGTGCGCGACCTGGCTGAGTTCCTGGAG 945 Query 14719 ATCTATGGCCTACCGATCCGGCTGGGGAAATA 14750 ||||| || || ||| | || ||||| | ||| Sbjct 946 ATCTACGGGCTGCCGCTGCGTCTGGGCACATA 977 >seq142977 Length=495 Score = 91.5 bits (100), Expect = 3e-14 Identities = 289/437 (66%), Gaps = 21/437 (5%) Strand=Plus/Minus Query 14136 GCACCCGGCCAAGGGGCTGACGCCGGCCAAGCTGGCTCGCATCCTGGTCGAGGCCGAACA 14195 |||||| || ||| || ||||| |||||||||| | ||||||| || |||||| || Sbjct 454 GCACCCAACCCGGGGCCTCACGCCTTCCAAGCTGGCCCAGATCCTGGACGCGGCCGAGCA 395 Query 14196 GGGCAACCTCCAAGCCCAGGCCGAATTGTTCATGGACATGGAGGAACGCGACGCCCACCT 14255 || ||||| |||||| ||| ||||| ||||||||||||| |||| ||| | Sbjct 394 AGGAGACCTCACGGCCCAGTTCGACCTGTTCGAGGACATGGAGGAAAAGGACGGCCATAT 335 Query 14256 GTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTGGCCTGGATTGGGCGGTCGAACC 14315 | |||| ||| ||||||| ||||| ||| |||||| |||| | || || Sbjct 334 CGCCTCCGAGATGGGCAAGCGGCGCCGCGC---CCTGATCCTGGACTGGGAGATCACGCC 278 Query 14316 CCCGCGTAACGCCTCGGCGGCC-GAGAAAGC-CGATGCCGACTACTTGCACGAGCTATTG 14373 || ||||| | || || | ||||| | ||||||| | ||| |||||| || Sbjct 277 GCCCGAAAACGC--CAGCACCCTGGAAAAGCGCAATGCCGAGCAGTTGGGCGAGCTGGTG 220 Query 14374 CTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGATGCGTTGGACGGCATCGGCCACGGC 14433 | | | | | || ||||| || | |||| || ||||| ||||||| | ||| Sbjct 219 CAGGCCATACCGGACCTAGAGGATGTGATCTTCGACGCCACGGACGCCATCGGCAAAGGC 160 Query 14434 TACAGCTGCA----TTGAACTGGAGTGGGCGCTACAGGGGCGCG-AGTGGATGCCGTTG- 14487 | |||| ||||| | || | ||| | | |||| | | ||| |||| | Sbjct 159 T----TTGCAAACCTTGAAATCGAAT-GGCACCGCGAGGGCAAGTACTGGGTGCCCAAGA 105 Query 14488 GCGTTCCAC-CACCGACCGCAGAGCTGGTTCCAGCTCAACCCCGAAGACCAGAACGAGCT 14546 || | ||| ||||| |||||| |||||| ||||| ||| || | || | || || Sbjct 104 GCAT--CACGCACCGGCCGCAGTCCTGGTTTCAGCTGCACCGCGGATTCCGCCAGGAACT 47 Query 14547 GCGGCTGCGCGACAACA 14563 ||| |||||| ||||| Sbjct 46 GCGCCTGCGCACCAACA 30 >seq139399 Length=451 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20087 CGCATCCCGACGAACTGGTCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACG 20146 |||| |||||||| || |||||||| || || |||| ||| ||||| | |||| || Sbjct 3 CGCACCCCGACGAGCTCGTCTTCGCGCTCCTGCAGGCGGGCTTCGCCACGCGGTGCTTCG 62 Query 20147 ACGGTCAAAACTTCTTCGACACCGATCACCCGGTC 20181 |||| || ||||||||||||| |||||||| ||| Sbjct 63 ACGGCCAGTACTTCTTCGACACGGATCACCCTGTC 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116067540081972